genome.fa.s5950.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005950.1 Hibiscus syriacus cultivar Beakdansim tig00013971_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  122822

Tables:   1   

This is table  1  of  1  ( 85 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16560--16624	31	2.1	31	91	5	105	44	10	12	32	1.76
17731--17770	2	20.0	2	100	0	80	50	0	0	50	1.00
27684--27735	21	2.5	21	81	3	61	38	19	25	17	1.93
27724--27837	20	5.7	20	83	6	113	31	25	18	24	1.97
27721--27837	61	1.9	61	85	0	162	33	24	17	23	1.97
28353--28433	19	4.5	19	73	16	73	46	24	17	11	1.80
28429--28613	19	10.1	19	75	14	156	11	21	22	44	1.83
28429--28613	33	5.1	38	77	12	156	11	21	22	44	1.83
28567--28612	20	2.3	20	84	0	65	13	21	15	50	1.78
30615--30737	42	2.9	42	80	2	122	22	36	17	22	1.95
30671--30737	21	3.2	21	66	6	55	23	35	20	19	1.95
32533--32626	20	4.7	20	80	2	89	23	18	24	34	1.96
32513--32627	20	5.7	20	78	5	88	23	17	23	35	1.95
32616--32708	20	4.5	21	78	4	100	17	24	18	39	1.91
32555--32689	41	3.3	41	82	4	139	19	21	20	38	1.94
32616--32708	41	2.3	41	100	0	186	17	24	18	39	1.91
35758--35825	26	2.6	25	79	6	73	45	1	0	52	1.09
37260--38342	4	271.5	4	97	0	1821	46	25	3	25	1.67
43233--43939	354	2.0	354	91	0	1153	29	17	20	31	1.96
48190--48350	64	2.5	65	85	7	195	33	18	21	27	1.96
48629--48667	18	2.1	19	85	4	53	28	2	15	53	1.55
49727--49789	21	3.0	21	83	4	81	28	25	22	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49726--49797	22	3.3	22	82	3	92	29	23	19	27	1.98
51408--51445	2	19.0	2	100	0	76	50	0	0	50	1.00
53034--53159	65	1.9	66	88	7	195	34	16	20	27	1.94
53313--53796	239	2.0	241	94	6	847	34	8	22	34	1.84
56387--56425	15	2.7	15	85	14	55	69	0	0	30	0.89
57564--57607	22	2.0	21	87	12	63	27	0	43	29	1.55
57627--57678	7	6.9	7	79	16	50	76	0	0	23	0.78
57642--57668	13	2.1	13	100	0	54	70	0	0	29	0.88
57956--58082	67	1.9	66	88	4	193	40	13	18	27	1.88
58024--58137	36	3.1	36	93	1	201	39	14	19	27	1.90
58043--58107	21	3.4	21	64	24	61	43	12	20	24	1.86
58031--58162	36	3.7	35	86	9	153	40	14	20	25	1.90
58983--59058	32	2.4	33	80	4	84	32	22	15	28	1.95
60137--60168	10	3.1	10	91	8	55	0	12	0	87	0.54
60119--60168	21	2.2	23	86	10	68	6	12	0	82	0.85
62044--62084	20	2.0	21	90	4	66	73	0	9	17	1.09
64384--64440	5	11.2	5	92	5	80	63	1	0	35	1.05
71143--71193	17	2.9	17	77	5	57	35	0	7	56	1.28
71644--71683	21	1.9	21	89	0	62	32	7	17	42	1.77
71635--71687	22	2.4	21	81	9	61	33	9	13	43	1.76
75719--75773	29	1.9	29	88	3	85	43	0	1	54	1.10
77207--77326	35	3.3	36	87	5	172	43	19	5	32	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77258--77318	21	3.2	21	68	29	64	42	19	4	32	1.73
81545--81919	183	2.0	185	92	3	623	42	3	8	45	1.50
82567--82679	35	3.2	36	87	5	167	43	17	4	34	1.69
82617--82677	21	3.2	21	65	29	55	42	18	4	34	1.71
83702--83749	24	2.0	24	91	0	78	18	14	12	54	1.71
83934--84001	33	2.1	33	94	0	118	30	14	5	48	1.68
88157--88208	21	2.5	20	78	6	59	40	19	25	15	1.90
88197--88331	20	6.7	20	81	7	130	33	24	18	23	1.97
88176--88331	61	2.6	61	84	2	206	34	23	19	21	1.96
88499--88542	22	2.0	22	90	0	70	20	43	15	20	1.88
89001--89055	25	2.2	24	78	15	58	20	9	18	52	1.71
90184--90228	18	2.5	18	88	0	72	26	44	15	13	1.83
90710--90776	20	3.4	20	81	2	73	38	23	22	14	1.92
90812--90879	33	2.1	33	94	2	120	14	17	20	47	1.83
90805--90863	14	3.9	14	73	16	55	11	15	22	50	1.76
91265--91352	41	2.1	42	85	2	124	21	43	14	20	1.88
92972--93047	20	3.8	20	72	6	73	17	19	21	42	1.90
93261--93310	20	2.5	20	80	0	73	22	18	22	38	1.94
94173--94226	24	2.2	24	86	0	72	24	16	18	40	1.90
94401--94425	12	2.1	12	100	0	50	72	0	28	0	0.86
96714--96844	19	7.7	19	63	23	76	43	18	22	16	1.88
96714--96840	33	3.8	33	84	4	175	43	18	22	16	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96715--96847	66	2.0	66	92	0	221	42	18	21	18	1.90
96849--96929	33	2.5	33	93	0	135	11	23	20	44	1.84
96869--96929	19	3.5	19	65	21	51	11	22	21	44	1.84
97035--97071	14	2.6	14	91	0	65	45	24	0	29	1.53
98446--98561	21	5.5	21	66	8	56	22	21	33	22	1.97
98456--98631	84	2.1	84	96	0	325	23	17	36	22	1.94
98426--98598	42	4.1	41	76	10	163	21	19	35	23	1.96
98465--98628	42	3.9	42	77	6	170	23	17	37	22	1.94
98850--99034	91	2.0	91	89	6	284	47	19	11	21	1.81
100696--100817	20	6.8	19	67	20	75	42	20	24	12	1.86
100721--100817	33	2.9	33	92	1	158	40	22	25	11	1.87
100818--100884	19	3.5	19	83	2	80	11	16	23	47	1.80
101399--101451	20	2.7	20	93	0	88	26	20	28	24	1.99
101460--101513	20	2.7	20	97	0	99	25	18	24	31	1.97
101400--101516	61	1.9	61	85	0	162	23	17	24	33	1.97
101400--101534	61	2.2	61	81	2	155	22	20	24	32	1.98
102759--102965	101	2.0	102	98	0	398	31	9	9	49	1.68
110552--110582	11	2.8	11	100	0	62	70	0	0	29	0.87
112838--112903	33	2.0	33	100	0	132	15	15	30	39	1.88

Tables:   1

The End!