genome.fa.s5964.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005964.1 Hibiscus syriacus cultivar Beakdansim tig00014013_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  157834

Tables:   1   

This is table  1  of  1  ( 81 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2587--2611	2	12.5	2	100	0	50	48	0	0	52	1.00
7154--7194	2	20.5	2	100	0	82	48	0	0	51	1.00
40643--40700	20	2.6	22	89	10	84	31	20	22	25	1.98
41591--41652	31	2.0	31	84	6	81	24	19	20	35	1.96
41624--41709	30	2.9	30	82	1	93	18	22	25	33	1.96
45242--45340	35	2.8	36	72	14	89	45	0	3	51	1.16
45295--45340	12	3.9	12	75	16	51	50	0	0	50	1.00
45288--45339	23	2.2	24	83	10	72	46	0	0	53	1.00
45289--45374	11	7.7	11	70	16	61	47	0	1	51	1.08
45288--45357	35	2.0	34	84	13	90	47	0	1	51	1.09
45353--45424	27	2.7	26	75	12	74	50	1	1	47	1.18
45349--45455	54	2.0	54	85	7	146	47	0	0	50	1.13
46066--46092	13	2.1	13	100	0	54	22	25	14	37	1.93
55529--55559	5	6.2	5	100	0	62	19	0	80	0	0.71
57974--58007	18	1.9	18	88	5	52	14	26	32	26	1.95
58978--59242	138	1.9	137	83	3	345	38	6	7	47	1.57
68419--68498	23	3.7	22	85	6	92	23	33	22	20	1.97
68441--68504	20	3.1	20	86	8	76	18	34	28	18	1.95
71855--72104	125	2.0	125	100	0	500	40	15	16	27	1.88
78213--78334	37	3.3	37	68	2	120	30	23	13	31	1.94
78201--78315	36	3.2	36	68	2	113	32	24	14	28	1.95
78174--78388	73	2.9	73	93	2	360	30	20	13	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78410--78971	118	4.7	119	84	7	707	39	15	17	26	1.90
80918--81026	31	3.5	31	97	0	200	39	22	19	19	1.93
83604--83995	147	2.8	141	81	8	437	38	6	8	46	1.60
86747--86852	8	13.6	8	69	15	62	33	0	1	63	1.12
86780--86852	32	2.4	30	75	13	76	34	0	2	63	1.09
89000--89076	33	2.3	33	80	8	93	36	6	45	11	1.67
89152--89689	83	6.5	83	81	3	530	28	18	18	33	1.95
89166--89644	250	1.9	249	81	3	577	29	18	17	34	1.94
89774--89820	24	2.0	24	87	8	69	44	25	0	29	1.54
89776--89826	16	3.2	16	75	5	50	49	23	0	27	1.51
93022--93162	57	2.5	57	92	0	237	52	4	18	24	1.65
93127--93199	37	2.0	37	88	0	110	49	2	16	31	1.60
93178--93279	49	2.1	49	92	0	168	49	5	16	28	1.69
93025--93298	143	1.9	145	89	6	426	50	5	17	26	1.68
95844--95890	15	3.2	15	84	3	60	46	4	0	48	1.21
96638--96735	21	4.8	20	76	6	79	38	22	17	21	1.93
96702--96931	20	11.5	20	81	5	232	36	24	18	19	1.94
100119--100330	33	6.2	34	80	14	217	45	18	22	13	1.84
100161--100335	53	3.3	53	96	1	325	44	17	23	14	1.85
100307--100422	53	2.2	52	87	3	169	18	23	18	39	1.92
100345--100441	18	5.4	19	82	15	134	14	22	17	45	1.85
100326--100441	18	6.7	18	78	18	122	13	24	18	43	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100548--100584	14	2.6	14	91	0	65	45	21	0	32	1.52
101979--102041	21	3.0	21	70	9	65	20	19	36	23	1.95
102587--102643	14	3.7	14	77	20	60	45	22	21	10	1.82
102496--102660	33	4.8	33	82	6	161	46	24	18	10	1.81
102496--102665	19	9.6	19	77	13	148	45	24	19	11	1.82
102661--102789	19	7.3	19	75	17	125	8	17	28	45	1.77
102661--102752	33	2.8	33	93	3	150	7	18	28	45	1.76
102837--103397	93	6.1	93	98	0	1090	45	19	12	22	1.83
105086--105181	20	5.2	19	72	21	87	45	17	25	11	1.82
105132--105188	14	3.7	14	75	20	60	43	22	24	8	1.81
105084--105205	33	3.5	33	87	11	156	45	18	24	10	1.81
105222--105278	14	3.7	14	75	20	60	8	24	22	43	1.81
105206--105286	33	2.5	33	95	0	144	8	22	22	46	1.78
105263--105338	21	3.7	21	82	3	100	13	25	15	46	1.82
105262--105339	41	1.9	41	94	0	138	14	25	15	44	1.84
105417--105487	33	2.2	33	92	0	115	47	18	22	11	1.80
105866--106039	20	8.6	20	82	5	208	20	19	25	34	1.96
106007--106060	20	2.7	19	85	5	63	11	16	25	46	1.80
105866--106039	60	2.9	60	83	0	240	20	19	25	34	1.96
106671--106715	20	2.3	20	82	17	67	60	0	4	35	1.17
106673--106713	19	2.2	19	91	8	66	60	0	4	34	1.18
110037--110070	16	2.1	16	94	0	59	35	20	8	35	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117764--117795	2	16.0	2	100	0	64	50	0	0	50	1.00
118400--118426	12	2.2	12	100	0	54	0	14	59	25	1.36
118563--118722	30	5.3	30	90	0	221	13	45	23	17	1.84
130206--130230	3	8.3	3	100	0	50	32	0	0	68	0.90
130280--130304	3	8.3	3	100	0	50	68	0	0	32	0.90
130280--130340	15	4.3	13	82	12	50	67	1	0	31	1.01
132023--132280	101	2.5	105	84	6	339	26	18	16	38	1.92
132462--132562	41	2.5	40	90	3	150	21	23	7	46	1.77
132504--132823	113	2.8	113	92	0	523	24	22	15	38	1.92
142453--142514	15	4.3	13	76	15	52	67	1	0	30	1.00
142485--142514	14	2.2	14	94	5	53	73	3	0	23	0.98
147052--147146	48	2.0	48	95	0	172	30	23	21	25	1.99
149195--149240	20	2.4	19	85	7	65	41	2	0	56	1.11
149203--149288	31	2.8	30	75	8	84	43	2	4	50	1.36
149368--149430	23	2.8	22	83	11	74	47	1	0	50	1.10

Tables:   1

The End!