genome.fa.s5966.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005966.1 Hibiscus syriacus cultivar Beakdansim tig00014015_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43346

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
257--333	36	2.1	36	95	0	136	53	0	1	45	1.08
2458--2517	2	31.0	2	93	6	106	50	0	0	50	1.00
2815--2891	39	2.0	39	87	5	111	25	15	12	45	1.82
3204--3242	20	1.9	19	85	10	51	15	5	10	69	1.34
5522--5560	19	2.1	18	90	4	60	38	0	25	35	1.56
5654--5698	13	3.4	13	80	17	56	44	8	0	46	1.34
6103--6264	86	1.9	86	92	2	272	44	9	11	33	1.74
8593--9056	182	2.6	179	90	4	699	26	17	14	42	1.87
12299--12343	18	2.3	20	77	14	58	37	0	0	62	0.96
12302--12340	18	2.2	18	90	0	60	38	0	0	61	0.96
12480--12521	22	1.9	22	85	9	59	30	2	2	64	1.19
12511--12571	23	2.6	24	76	12	72	31	4	0	63	1.15
12519--12558	20	2.0	20	85	0	53	32	5	0	62	1.17
12533--12598	13	5.8	12	73	22	54	30	3	0	66	1.06
12512--12597	23	3.9	22	78	14	70	30	4	0	65	1.13
12677--12732	19	2.9	19	75	19	62	23	8	1	66	1.30
17663--17717	22	2.5	22	100	0	110	36	27	12	23	1.91
18128--18164	18	2.0	19	89	5	58	21	5	29	43	1.75
18309--19784	106	13.9	106	94	0	2511	33	25	18	22	1.96
20536--20629	37	2.5	37	89	3	136	39	15	12	31	1.86
21050--21087	10	4.1	9	83	16	51	34	0	0	65	0.93
21043--21087	23	2.0	23	86	8	65	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21126--21163	3	12.3	3	88	5	58	36	0	0	63	0.95
21113--21164	21	2.5	21	84	9	70	32	3	0	63	1.12
21329--21384	22	2.5	22	80	13	69	30	3	0	66	1.09
21329--21407	23	3.4	21	77	16	59	29	3	0	67	1.08
21350--21419	23	3.1	21	76	21	63	25	2	0	71	1.00
21329--21419	45	2.0	44	81	10	105	28	4	0	67	1.10
21360--21417	28	2.1	27	81	9	64	27	3	0	68	1.05
21506--21561	19	2.9	19	75	19	62	23	8	1	66	1.30
22414--22448	3	11.7	3	93	0	61	2	0	28	68	1.04
23890--24046	64	2.5	65	84	8	198	32	18	21	28	1.96
24015--24065	19	2.7	19	100	0	102	29	21	25	23	1.99
23950--24130	83	2.2	84	81	10	212	33	20	20	25	1.97
25058--25148	30	3.1	30	88	1	130	21	19	27	30	1.98
41018--41092	39	2.1	37	82	12	93	42	16	16	25	1.87
42313--42380	33	2.1	33	91	0	109	32	19	19	29	1.96
42464--42649	67	2.9	64	85	9	240	30	12	13	42	1.83
42653--42747	36	2.7	34	82	9	102	32	17	13	35	1.89
42768--42840	32	2.4	30	80	19	80	30	17	12	39	1.87
42600--42840	137	1.8	129	81	12	292	29	18	13	38	1.89
42685--42869	97	1.9	99	84	6	250	28	18	13	38	1.89

Tables:   1

The End!