genome.fa.s5999.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005999.1 Hibiscus syriacus cultivar Beakdansim tig00014137_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  196101

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6134--6181	24	2.0	24	87	0	69	25	22	18	33	1.97
13959--13987	13	2.2	13	100	0	58	62	0	0	37	0.96
17679--18188	55	9.3	55	85	0	626	28	22	18	30	1.97
18236--18349	37	3.1	36	88	1	165	23	20	17	38	1.93
20219--20408	99	1.9	99	87	0	281	31	20	15	33	1.94
22652--22748	47	2.1	48	84	7	128	34	20	13	31	1.91
22675--22773	47	2.1	48	80	10	107	38	17	13	31	1.88
28099--28212	61	1.9	61	82	8	144	35	16	3	43	1.65
32806--32847	22	1.9	22	95	0	75	38	14	26	21	1.91
39889--39950	28	2.3	26	78	15	72	16	6	16	61	1.54
43129--43184	17	3.5	17	71	9	55	39	0	3	57	1.16
44833--44864	12	2.7	12	100	0	64	6	25	9	59	1.52
45228--45262	10	3.6	10	88	7	54	65	20	8	5	1.40
51100--51820	360	2.0	361	94	0	1266	35	23	14	25	1.93
53969--54000	2	16.0	2	100	0	64	50	0	0	50	1.00
54004--54096	10	9.3	10	75	19	63	19	3	2	75	1.05
54004--54090	9	9.1	9	75	19	70	19	3	2	74	1.07
54012--54114	30	3.5	28	72	16	84	17	5	1	74	1.10
54010--54065	21	2.8	21	82	12	57	19	5	0	75	1.00
54186--54304	12	9.3	12	70	17	57	26	3	1	68	1.14
54212--54242	4	7.8	4	100	0	62	22	0	0	77	0.77
54547--54588	9	4.4	9	78	21	50	35	0	2	61	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54739--54799	25	2.5	25	82	10	72	8	8	3	80	1.01
54760--54797	19	2.0	20	89	5	60	10	5	2	81	0.94
54759--54807	17	2.7	18	84	12	64	12	4	2	81	0.91
54759--54813	17	3.1	17	79	10	56	12	5	1	80	0.97
58734--58994	95	2.7	95	81	8	289	34	15	16	32	1.91
59857--61047	80	14.5	80	80	5	1177	33	22	17	25	1.96
59857--61047	163	7.3	163	86	1	1459	33	22	17	25	1.96
63004--63038	17	2.1	17	94	0	61	48	8	17	25	1.75
70786--70820	13	2.7	13	86	0	52	14	20	0	65	1.26
79214--79241	14	2.0	14	100	0	56	71	0	14	14	1.15
79228--79283	22	2.5	22	83	13	62	64	1	12	21	1.36
79699--79771	36	1.9	40	81	15	93	71	0	13	15	1.15
83885--83922	18	2.1	18	100	0	76	26	5	15	52	1.64
85114--85157	20	2.2	20	84	4	54	18	6	0	75	1.02
85163--85201	18	2.1	18	85	9	51	15	7	0	76	0.99
85253--85324	3	23.7	3	74	16	51	29	4	1	65	1.20
85827--85941	9	13.1	9	75	7	76	10	8	5	75	1.17
85860--85935	31	2.5	30	79	10	82	9	6	6	77	1.12
85876--85944	27	2.6	26	86	8	95	11	5	4	78	1.07
85893--85932	19	2.2	17	86	8	53	10	5	5	80	1.02
85829--85944	31	3.6	31	70	18	78	11	7	5	75	1.16
85876--85951	26	2.9	25	81	11	80	11	6	3	77	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85901--85958	26	2.2	28	78	12	68	12	10	3	74	1.19
89914--90169	95	2.7	95	85	4	327	34	18	16	30	1.93
91014--92154	80	13.9	81	78	5	1047	34	22	17	25	1.96
91014--92171	163	7.0	161	82	5	1144	34	22	17	25	1.95
94592--94766	9	18.6	9	67	21	58	16	8	2	72	1.20
94709--94797	18	4.9	18	77	13	85	11	8	1	78	1.01
94718--94773	22	2.5	22	83	8	69	8	7	1	82	0.92
98229--98279	26	2.0	26	100	0	102	27	13	31	27	1.94
103939--103979	15	2.7	15	92	0	64	58	12	19	9	1.61
107601--107692	26	3.6	26	67	5	71	53	8	35	2	1.44
108256--108286	12	2.6	12	94	0	53	12	6	9	70	1.31
109847--110154	85	3.6	84	86	3	402	32	16	20	30	1.95
110133--110177	13	3.5	13	87	0	63	31	22	20	26	1.98
111953--112047	36	2.7	35	77	9	111	35	18	17	27	1.94
112114--112260	78	1.9	78	89	0	231	41	13	22	22	1.89
113453--113487	12	2.8	13	86	8	54	40	5	8	45	1.58
113509--113577	19	3.7	18	90	3	102	24	20	26	28	1.99
113997--114030	12	2.7	13	90	4	52	44	5	8	41	1.60
121980--122004	13	1.9	13	100	0	50	56	16	0	28	1.41
123409--123434	13	2.0	13	100	0	52	46	23	15	15	1.83
126771--127194	214	2.0	214	87	4	622	37	22	12	27	1.90
129966--130002	18	2.0	20	89	10	60	43	10	18	27	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
141740--141793	25	2.4	21	75	21	63	16	27	12	42	1.85
141746--141797	25	2.1	25	96	0	95	15	28	15	40	1.88
158948--159666	365	2.0	365	93	0	1224	35	12	19	31	1.90

Tables:   1

The End!