genome.fa.s6010.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006010.1 Hibiscus syriacus cultivar Beakdansim tig00014177_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86387

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2626--2935	81	3.8	81	83	2	354	37	11	21	29	1.89
3001--3112	44	2.5	44	77	1	116	42	10	21	25	1.85
3049--3439	45	9.0	43	81	7	366	38	12	22	27	1.90
3049--3415	87	4.2	88	82	8	430	37	12	22	27	1.90
3049--3440	132	3.0	129	82	10	460	38	12	22	27	1.89
3083--3439	42	8.2	43	79	11	138	37	12	22	27	1.90
7478--7858	81	4.8	80	83	7	434	36	10	21	31	1.88
7517--7858	79	4.3	80	83	8	430	35	10	21	31	1.88
7975--8335	45	8.2	45	82	8	397	37	11	24	26	1.89
7975--8268	87	3.3	87	84	5	385	36	10	25	26	1.89
8142--8258	22	5.2	22	65	11	76	36	11	25	25	1.90
7988--8268	132	2.1	130	85	5	377	36	11	25	27	1.89
19326--19368	22	1.9	23	90	4	70	27	13	11	46	1.78
23488--23557	21	3.2	21	63	21	54	31	22	8	37	1.85
23384--23697	44	7.3	44	82	9	378	35	22	6	35	1.79
23595--23705	43	2.5	44	88	2	161	36	18	5	38	1.74
23838--23972	61	2.2	60	79	6	148	30	20	11	37	1.88
23782--24278	59	8.4	58	77	9	346	28	22	11	37	1.89
23812--24290	118	4.1	117	78	9	442	28	22	11	36	1.90
23899--24278	176	2.1	176	79	9	398	28	22	11	37	1.89
29544--29812	44	6.3	44	82	8	322	34	22	5	36	1.79
29630--29790	81	2.0	80	86	1	223	35	23	5	35	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29589--29812	125	1.8	123	88	1	340	34	22	5	37	1.78
29953--30085	61	2.2	61	84	5	164	30	18	12	39	1.87
30332--30463	62	2.2	61	77	12	146	27	21	12	37	1.90
30272--30768	59	8.4	59	78	9	410	28	22	11	37	1.89
29863--30623	376	2.0	376	93	1	1314	30	21	11	37	1.88
30621--30720	31	3.3	31	63	18	84	29	24	10	37	1.87
30272--30768	176	2.8	174	75	10	445	28	22	11	37	1.89
30493--30800	118	2.6	115	83	10	390	29	23	11	35	1.90
30493--30800	59	5.3	58	82	9	253	29	23	11	35	1.90
36035--36356	44	7.3	44	87	2	443	34	21	6	37	1.79
36497--36632	62	2.2	61	79	12	154	29	22	11	37	1.88
36407--37167	375	2.0	376	92	2	1280	29	21	11	37	1.88
37037--37325	117	2.5	117	83	5	377	30	21	12	35	1.91
37037--37313	59	4.7	59	83	3	337	30	21	11	35	1.90
39065--39116	24	2.2	25	79	10	63	59	15	17	7	1.58
44426--44462	19	1.9	19	88	0	56	40	8	16	35	1.78
48375--48654	44	6.4	44	92	0	407	41	12	22	23	1.87
50622--50836	82	2.6	81	88	2	313	19	15	23	41	1.89
51611--51663	21	2.5	20	85	11	70	20	20	39	18	1.92
58012--58187	85	2.1	83	82	10	214	32	17	18	31	1.94
64748--64833	39	2.2	39	95	0	154	45	18	6	29	1.75
74965--75039	32	2.3	32	86	0	105	29	10	18	41	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78786--79081	81	3.6	81	83	2	353	36	11	21	29	1.89
79435--79504	22	3.1	22	66	11	61	41	10	22	25	1.85
79163--79586	45	9.4	44	86	2	499	39	11	22	26	1.88
79208--79644	90	4.8	89	82	6	440	39	11	21	27	1.88
83679--84063	81	4.8	81	87	3	508	36	10	21	31	1.88
84181--84549	45	8.2	45	85	3	460	37	11	24	27	1.89
84353--84468	22	5.2	22	65	13	76	37	12	25	25	1.90
84181--84549	89	4.1	89	83	4	458	37	11	24	27	1.89

Tables:   1

The End!