genome.fa.s6013.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006013.1 Hibiscus syriacus cultivar Beakdansim tig00014181_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97447

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2465--2627	44	3.8	44	89	4	260	40	12	20	26	1.88
2465--2627	85	1.9	86	91	3	265	40	12	20	26	1.88
4326--4366	21	2.0	21	85	0	55	31	9	21	36	1.86
19991--20193	34	5.9	34	87	5	261	35	22	19	21	1.96
20314--20423	42	2.6	42	77	4	125	27	22	21	28	1.99
20522--20623	42	2.5	41	80	1	114	25	23	21	29	1.99
20736--20836	42	2.4	41	78	4	105	25	21	21	30	1.98
20197--37643	426	40.6	428	82	7	16262	32	15	19	32	1.93
21207--21287	41	2.0	41	85	4	110	29	23	20	25	1.99
20197--30604	213	48.8	214	90	2	15861	32	15	19	32	1.93
21591--21691	42	2.5	41	77	6	98	23	24	21	29	1.99
22228--22328	42	2.4	41	81	1	121	24	22	22	29	1.99
22442--22541	41	2.5	41	78	4	114	24	25	23	28	2.00
23289--23390	42	2.5	42	82	4	118	23	22	20	33	1.97
23933--24034	42	2.5	41	78	1	114	24	22	22	30	1.99
20197--37643	643	27.1	642	82	8	15824	32	15	19	32	1.93
26073--26174	42	2.5	41	78	1	105	25	21	22	30	1.99
27567--27666	41	2.4	40	77	8	94	24	23	21	32	1.98
30385--30740	171	2.1	171	95	1	633	32	14	20	32	1.93
31152--31252	42	2.4	41	78	1	103	24	22	22	29	1.99
31585--31693	42	2.6	42	72	5	96	26	22	21	30	1.98
30556--32522	430	4.6	426	89	2	2919	31	15	20	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32371--32685	163	1.9	164	95	0	569	33	14	19	32	1.92
32523--37643	213	24.0	213	90	2	7793	32	15	19	32	1.93
34108--34209	42	2.5	41	80	1	114	24	22	22	30	1.99
37482--37809	166	2.0	166	90	0	521	29	20	18	31	1.96
37682--37790	42	2.6	42	72	5	96	26	22	21	30	1.98
37892--37993	42	2.5	41	81	1	123	22	23	22	31	1.98
37648--41654	213	18.7	213	90	1	5922	31	15	19	32	1.93
38962--39062	42	2.4	41	78	1	103	24	22	22	29	1.99
39391--39499	42	2.6	42	72	5	96	26	22	21	30	1.98
39601--39702	42	2.5	41	80	1	114	23	23	22	30	1.99
20197--41654	856	25.3	854	88	3	29042	32	15	19	32	1.93
40673--40774	42	2.5	41	77	4	107	25	22	21	30	1.99
41534--41651	41	2.8	41	78	10	123	24	19	22	33	1.97
41699--41823	56	2.3	55	83	8	155	32	16	24	26	1.96
45935--45982	24	2.0	23	84	4	60	37	2	2	58	1.22
45987--46049	21	3.0	21	78	19	69	38	0	4	57	1.20
54116--54154	17	2.4	17	95	4	71	51	17	0	30	1.46
55724--55805	40	2.0	40	100	0	164	35	26	14	23	1.93
61330--61369	21	1.9	21	89	0	62	27	17	17	37	1.92
65473--65512	21	1.9	21	94	0	71	32	15	12	40	1.84
86268--86321	27	2.0	27	92	0	90	29	25	14	29	1.95

Tables:   1

The End!