Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006016.1 Hibiscus syriacus cultivar Beakdansim tig00014192_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63152

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1976--2027
14
3.7
14
92
5
79
23
30
21
25
1.99
6638--6839
101
2.0
100
88
0
296
29
25
18
26
1.98
11702--11902
102
2.0
102
92
0
339
28
26
18
25
1.98
20092--20134
21
2.0
21
81
4
50
27
23
25
23
2.00
22334--22358
5
5.0
5
100
0
50
60
0
0
40
0.97
22454--22497
23
1.9
23
95
0
79
38
9
13
38
1.77
22473--22520
18
2.6
18
83
12
62
41
6
10
41
1.64
22473--22522
19
2.7
19
85
11
68
42
6
10
42
1.63
30164--30316
5
31.6
5
86
9
210
58
1
0
40
1.06
30433--30501
2
34.5
2
100
0
138
50
0
0
49
1.00
30435--30598
12
14.7
10
77
17
52
53
4
1
40
1.31
30546--30596
26
2.0
26
92
7
86
58
3
0
37
1.16
32307--32342
11
3.4
11
88
3
56
2
8
0
88
0.59
32294--32342
20
2.3
22
79
10
57
2
14
0
83
0.73
32307--32342
10
3.5
10
92
7
63
2
8
0
88
0.59
32294--32346
19
2.8
19
81
13
65
3
15
0
81
0.83
52224--52291
34
2.0
34
100
0
136
26
26
20
26
1.99
53190--53271
2
43.5
2
74
20
70
48
2
0
48
1.14
56242--56282
12
3.5
12
84
12
50
75
0
2
21
0.92
58296--58357
29
2.1
29
82
11
74
54
0
11
33
1.36
59434--59689
92
2.8
90
85
5
329
26
22
14
37
1.92
60213--60280
37
1.9
34
88
8
100
50
14
16
19
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60993--61099
41
2.6
42
83
2
128
29
20
23
26
1.99
61147--61299
53
2.8
54
78
11
163
39
20
9
30
1.85

Tables:   1

The End!