genome.fa.s6040.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006040.1 Hibiscus syriacus cultivar Beakdansim tig00014262_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77843

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3807--3852	19	2.6	17	80	12	56	30	19	26	23	1.98
5420--5480	23	2.7	23	81	0	77	19	26	22	31	1.98
12444--12529	39	2.3	39	89	4	131	48	6	12	31	1.68
20908--20998	45	2.0	45	93	0	155	49	14	14	21	1.78
25731--25759	6	4.8	6	100	0	58	34	0	0	65	0.93
29309--29350	21	2.0	21	90	0	66	26	26	21	26	1.99
29458--29524	19	3.5	19	89	2	89	35	13	10	40	1.79
29589--29648	29	2.0	31	90	6	97	41	16	6	35	1.75
32931--32997	19	3.5	19	79	2	71	35	11	10	41	1.76
33062--33121	29	2.0	31	90	6	97	41	16	6	35	1.75
36639--36668	5	6.0	5	100	0	60	40	40	0	20	1.52
40808--40855	22	2.2	21	96	3	87	58	16	0	25	1.38
41568--41637	30	2.3	30	92	0	113	28	8	11	51	1.67
52736--52901	75	2.2	75	88	2	244	19	24	32	22	1.98
53522--53593	36	2.0	36	97	0	135	29	26	22	22	1.99
55533--55588	18	3.1	18	76	5	67	17	25	8	48	1.76
60508--60574	3	23.0	3	79	11	77	67	1	2	28	1.14
60508--60580	35	2.1	35	92	5	121	65	2	4	27	1.24
60785--61114	130	2.5	129	89	2	482	24	19	29	26	1.98
60818--61068	43	5.7	45	71	13	137	25	19	28	26	1.99
60947--61107	83	1.9	83	87	7	232	24	19	31	24	1.98
61146--61207	28	2.2	28	88	5	90	51	12	11	24	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61542--61600	15	3.9	15	95	0	100	44	5	20	30	1.73
61757--61880	63	2.0	63	84	4	162	43	11	14	30	1.80
61976--62032	30	1.9	29	82	3	69	43	10	14	31	1.79
62115--62241	37	3.6	37	69	22	112	44	11	11	31	1.77
62062--62259	67	3.0	66	88	5	276	44	12	12	30	1.79
62235--62286	27	1.9	27	96	0	95	50	11	9	28	1.70
62212--62573	141	2.5	141	93	2	591	42	15	11	30	1.83
62516--62609	28	3.4	27	81	11	111	48	14	10	25	1.76
62855--62973	36	3.4	36	79	9	113	35	12	21	30	1.91
62889--62973	36	2.4	36	86	4	118	35	11	22	30	1.90
62925--63164	105	2.3	104	85	6	310	38	11	20	29	1.88
63131--63267	36	3.8	36	78	5	152	35	13	19	31	1.90
63133--63265	71	1.9	72	85	4	189	35	13	19	31	1.91
63625--63672	20	2.4	20	89	0	78	25	0	27	47	1.52
64881--64930	22	2.3	22	89	0	82	6	6	10	78	1.10
64889--64928	12	3.5	12	86	13	66	7	7	12	72	1.27
64918--64963	20	2.2	20	88	7	65	2	19	8	69	1.25
64924--64977	27	2.1	25	82	6	63	1	18	7	72	1.17
65621--65662	20	2.1	20	86	0	57	40	14	21	23	1.90
65579--65672	46	2.1	45	84	6	118	37	10	26	25	1.89
71679--71742	3	22.0	3	78	12	71	67	1	3	28	1.15
71681--71748	32	2.1	32	91	5	111	66	2	4	26	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74146--74580	239	1.8	239	91	0	726	13	34	26	25	1.92

Tables:   1

The End!