genome.fa.s6042.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006042.1 Hibiscus syriacus cultivar Beakdansim tig00014264_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  131952

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
447--484	12	3.2	12	81	11	51	78	0	18	2	0.86
2466--2506	12	3.3	13	80	10	50	41	0	4	53	1.22
3621--3672	2	27.5	2	88	11	83	48	0	0	51	1.00
3708--3769	31	2.1	28	85	8	79	33	6	3	56	1.41
3972--4009	16	2.3	17	86	13	53	10	13	2	73	1.19
4542--4585	20	2.1	21	88	12	65	4	31	11	52	1.57
7746--8028	105	2.6	107	83	3	329	39	11	12	36	1.79
12843--12877	3	11.7	3	88	11	54	31	0	0	68	0.90
13353--13396	23	1.9	23	85	0	61	47	4	4	43	1.44
18253--18295	15	2.9	15	78	0	50	13	13	62	9	1.53
34826--35014	20	9.3	20	76	10	141	28	24	17	29	1.98
34908--35015	20	5.4	20	92	0	153	28	26	18	25	1.98
35752--35806	21	2.6	21	85	0	74	30	27	20	21	1.98
39079--39126	23	2.1	23	88	0	69	35	12	18	33	1.89
39505--39556	23	2.3	22	90	6	77	44	19	1	34	1.62
39515--39577	23	2.7	23	90	0	90	38	19	6	36	1.77
39907--39958	23	2.3	22	90	6	77	44	19	1	34	1.62
39917--39979	23	2.7	23	90	0	90	38	19	6	36	1.77
40321--40380	23	2.6	23	89	0	84	38	18	6	36	1.77
39193--40461	401	3.2	404	96	2	2331	39	13	8	38	1.74
40739--40790	23	2.3	22	90	6	77	44	19	1	34	1.62
40749--40811	23	2.7	23	90	0	90	38	19	6	36	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40052--40909	431	2.0	427	98	0	1662	39	13	8	39	1.74
43353--43872	184	2.8	184	96	0	941	33	16	14	35	1.89
45406--47822	199	12.1	199	97	0	4536	32	15	15	37	1.88
45406--47822	399	6.1	398	97	0	4554	32	15	15	37	1.88
47902--47945	19	2.4	19	92	3	72	56	9	2	31	1.43
49736--49801	33	2.0	33	87	0	96	24	45	1	28	1.62
52112--52158	20	2.4	19	79	10	58	19	17	8	55	1.67
52278--52323	20	2.3	20	89	10	76	17	17	10	54	1.70
52389--52833	225	2.0	225	91	4	720	39	7	8	45	1.62
60975--61015	21	1.9	22	85	14	59	9	21	31	36	1.86
62251--62292	3	14.0	3	94	0	75	33	0	2	64	1.07
63671--63700	3	10.0	3	92	0	51	33	3	0	63	1.11
71640--71863	114	2.0	115	90	2	353	33	15	20	30	1.93
72819--72961	76	1.9	76	85	2	198	30	18	22	27	1.97
75152--76317	76	15.4	76	95	0	1942	23	20	21	34	1.96
76490--76528	3	13.0	3	94	0	69	33	0	2	64	1.08
77558--77587	15	1.9	16	93	6	53	23	0	6	70	1.11
77906--77938	3	11.0	3	93	0	57	33	3	0	63	1.10
79729--79846	59	2.0	59	98	0	227	29	22	14	33	1.93
84626--84699	34	2.2	34	82	0	85	54	5	4	36	1.43
90154--90431	107	2.6	106	81	11	318	53	11	2	31	1.52
90623--90679	25	2.3	25	84	0	69	31	19	15	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90850--90959	39	2.8	40	76	8	100	22	26	22	28	1.99
94243--94289	20	2.3	20	85	7	60	29	17	25	27	1.97
102414--102541	42	3.0	42	95	0	220	35	24	11	28	1.91
108766--108796	15	2.1	15	100	0	62	6	41	25	25	1.79
115436--115486	22	2.3	22	83	10	59	39	1	0	58	1.09
117529--117882	41	8.6	41	78	10	321	29	17	18	35	1.93
120732--120786	24	2.3	24	96	0	101	14	16	14	54	1.71
122698--122979	42	6.7	42	79	6	275	23	21	19	34	1.96
122729--123014	84	3.3	86	79	6	321	26	23	18	31	1.97
122729--122986	126	2.0	126	86	8	355	25	22	18	32	1.97
123500--123555	15	3.3	18	74	23	59	42	0	0	57	0.99
123500--123565	31	2.1	31	83	5	80	43	0	0	56	0.99
125791--125827	19	2.0	18	89	5	56	27	5	10	56	1.55

Tables:   1

The End!