genome.fa.s6047.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006047.1 Hibiscus syriacus cultivar Beakdansim tig00014304_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  680228

Tables:   1   2   3   

This is table  3  of  3  ( 282 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
622958--623869	106	8.6	106	93	0	1455	33	25	17	22	1.96
623923--624099	84	2.1	85	87	1	248	29	23	21	25	1.99
624328--624396	3	23.3	3	75	8	61	39	4	0	56	1.19
626922--626966	21	2.1	21	83	0	54	51	6	6	35	1.55
627382--627514	60	2.2	60	84	5	162	37	13	12	36	1.83
631468--631541	36	2.0	37	84	7	98	51	4	1	43	1.29
631463--631543	37	2.2	38	80	13	96	53	3	1	41	1.27
633409--633450	22	1.9	22	100	0	84	54	0	9	35	1.33
634766--634802	20	1.9	19	89	10	58	45	10	24	18	1.81
637868--637912	22	2.0	22	100	0	90	60	13	22	4	1.51
641439--641509	28	2.5	28	81	0	79	25	14	19	40	1.89
642613--642753	41	3.5	41	85	1	185	17	19	21	41	1.91
642638--642777	20	6.9	20	78	4	147	15	21	21	42	1.89
642617--642691	21	3.6	21	72	3	80	20	17	25	37	1.94
642613--642777	41	4.0	41	84	3	181	16	20	21	40	1.91
642682--642819	40	3.4	40	82	8	138	16	21	20	41	1.90
642643--642777	61	2.2	61	84	2	164	14	20	21	42	1.88
642742--642811	21	3.4	21	74	9	72	20	20	24	35	1.96
643021--643052	14	2.3	14	94	0	55	34	15	25	25	1.95
643045--643098	21	2.7	20	94	2	90	18	18	24	38	1.93
643127--643182	22	2.7	21	88	5	78	23	12	32	32	1.92
643036--643189	20	7.4	21	76	7	120	25	16	27	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
643194--643640	63	7.1	63	70	11	351	30	15	20	33	1.94
643370--643441	22	3.4	21	81	7	92	25	15	27	31	1.95
643127--643651	252	2.1	252	85	4	695	30	15	21	32	1.95
643150--643653	126	4.0	128	78	9	559	30	15	21	32	1.94
643374--643461	41	2.1	42	82	2	106	22	18	25	34	1.96
643521--643577	21	2.7	21	100	0	114	35	21	22	21	1.96
643173--643696	251	2.1	250	83	5	655	31	16	20	31	1.95
643640--643779	41	3.4	41	89	6	194	40	21	20	17	1.91
643710--643783	20	3.7	20	73	10	78	43	22	21	12	1.86
645468--645528	31	2.0	31	86	0	86	44	19	11	24	1.84
654199--654323	31	4.0	31	80	9	146	29	19	20	31	1.97
656505--656617	31	3.6	32	78	4	97	38	4	10	46	1.59
657114--657138	2	12.5	2	100	0	50	48	0	0	52	1.00
657224--657253	4	7.5	4	100	0	60	0	26	0	73	0.84
667407--667698	51	5.5	51	83	5	332	27	26	14	31	1.95
667416--667827	55	7.7	55	82	7	404	28	24	14	32	1.95
667356--667711	158	2.2	158	83	7	443	29	25	14	30	1.95
667330--667827	106	4.6	109	78	9	404	28	24	14	32	1.95
669104--669148	23	1.9	24	90	4	74	0	17	2	80	0.82
669103--669148	24	1.9	24	91	8	76	0	17	2	80	0.81

Tables:   1   2   3

The End!