genome.fa.s6048.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006048.1 Hibiscus syriacus cultivar Beakdansim tig00014305_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  155113

Tables:   1   

This is table  1  of  1  ( 107 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
791--903	60	1.9	60	85	7	158	37	11	16	34	1.85
1169--1225	30	1.9	30	85	7	80	31	24	14	29	1.94
10488--10525	15	2.5	15	87	12	51	52	0	2	44	1.14
19713--19775	32	1.9	34	84	9	87	55	1	0	42	1.09
25757--25910	31	5.0	31	93	1	247	20	18	22	38	1.93
30147--30300	31	5.0	31	95	1	265	20	19	22	37	1.94
32169--32199	15	2.1	15	93	0	53	6	19	64	9	1.45
33986--34037	20	2.6	20	96	0	95	38	26	13	21	1.90
34112--34285	20	8.6	20	83	5	217	34	26	19	19	1.96
34112--34285	60	2.9	60	85	0	249	34	26	19	19	1.96
34667--34737	33	2.2	33	92	0	115	11	22	18	47	1.80
34858--34912	14	3.6	14	73	21	56	41	23	25	9	1.83
34858--34928	33	2.2	33	94	0	124	43	25	22	8	1.81
34924--35021	19	5.7	19	70	22	81	10	24	22	42	1.84
34946--35035	14	5.7	14	74	23	81	8	25	23	42	1.83
34929--35043	33	3.5	33	95	0	212	9	24	20	45	1.81
36774--37212	92	4.7	93	98	1	855	22	12	18	46	1.82
36774--37212	185	2.4	185	99	0	869	22	12	18	46	1.82
37256--37383	19	7.3	19	72	17	107	45	28	17	9	1.79
37293--37383	33	2.8	33	90	5	132	45	27	18	8	1.79
37379--37513	19	7.6	19	75	16	128	11	19	23	45	1.82
37401--37457	14	3.7	14	77	20	60	10	21	22	45	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37384--37476	33	2.8	33	95	0	168	10	20	21	47	1.80
37937--38305	20	18.5	20	86	5	451	20	18	26	34	1.96
39967--40004	19	2.0	19	94	0	67	44	18	10	26	1.82
40531--40584	21	2.6	21	87	0	81	31	29	20	18	1.96
40593--40633	21	2.0	21	95	0	73	21	24	24	29	1.99
40594--40640	21	2.2	21	84	0	67	25	25	23	25	2.00
41341--41494	21	7.4	20	72	16	118	36	22	19	21	1.95
41337--41515	42	4.3	42	92	1	299	35	24	19	21	1.96
41362--41540	21	8.6	21	75	11	154	34	25	19	21	1.97
55788--55857	21	3.3	20	75	15	70	18	17	27	37	1.93
55799--55878	21	3.7	22	75	18	64	20	16	23	40	1.91
55788--55884	42	2.3	42	91	3	151	20	16	24	38	1.93
56136--56176	21	2.0	21	100	0	82	29	21	24	24	1.99
56199--56314	21	5.6	20	84	9	126	22	22	23	31	1.98
57426--57453	6	4.7	6	100	0	56	71	0	0	28	0.86
59144--59183	8	4.9	8	81	6	53	67	0	0	32	0.91
59153--59197	14	3.1	14	81	18	56	66	0	0	33	0.92
59145--59197	25	2.2	24	86	10	72	66	0	0	33	0.92
59144--59195	17	3.1	17	82	17	65	67	0	0	32	0.91
60332--60625	121	2.5	120	77	9	282	29	15	9	44	1.79
65464--65491	2	14.0	2	100	0	56	50	0	0	50	1.00
67125--67247	60	2.0	60	93	0	210	41	8	19	30	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70700--70733	2	17.0	2	100	0	68	50	0	0	50	1.00
72639--72686	11	4.5	11	76	5	53	37	10	0	52	1.36
72638--72677	21	1.9	21	89	0	62	37	10	0	52	1.35
74350--74388	18	2.2	18	95	4	71	64	2	0	33	1.08
78072--78103	15	2.1	16	94	5	57	6	25	18	50	1.70
78854--78887	16	2.1	16	94	0	59	32	26	8	32	1.87
79527--79604	29	2.7	29	86	4	104	43	6	15	34	1.72
82290--82447	21	7.8	20	70	7	77	39	25	16	18	1.91
82434--82663	20	11.5	20	82	4	241	36	25	18	19	1.94
82414--82503	40	2.2	40	82	3	101	40	27	16	15	1.89
82434--82663	40	5.8	40	89	2	268	36	25	18	19	1.94
83344--83390	24	2.0	24	87	8	69	25	14	21	38	1.92
83565--83589	12	2.1	12	100	0	50	72	0	28	0	0.86
85906--85984	34	2.4	33	95	4	149	12	25	18	43	1.86
86058--86167	19	6.8	14	76	18	58	46	18	21	13	1.83
86043--86134	33	2.8	33	96	1	166	44	18	22	14	1.86
86075--86191	52	2.2	52	96	0	216	44	17	20	17	1.87
86198--86297	19	5.5	19	84	12	147	15	23	17	45	1.85
86181--86297	53	2.2	53	95	1	209	14	24	17	43	1.86
86403--86439	14	2.6	14	91	0	65	45	21	0	32	1.52
88416--88472	14	3.7	14	77	20	60	45	22	21	10	1.82
88397--88489	33	2.8	33	95	0	168	47	21	20	10	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88360--88494	19	7.6	19	76	16	128	45	23	19	11	1.82
88490--88618	19	7.3	19	75	17	125	8	17	28	45	1.77
88490--88581	33	2.8	33	93	3	150	7	18	28	45	1.76
88662--89134	93	5.1	93	98	0	921	45	19	12	22	1.83
90841--90930	14	5.7	14	74	23	81	41	24	25	8	1.84
90833--90947	33	3.5	33	95	0	203	44	21	24	9	1.82
90840--90952	19	6.8	18	72	23	88	42	23	24	9	1.84
90964--91020	14	3.7	14	75	20	60	8	24	22	43	1.81
90948--91028	33	2.5	33	93	0	135	8	22	23	45	1.79
91005--91080	21	3.7	21	85	3	109	11	25	18	44	1.83
91004--91081	41	1.9	41	94	0	138	12	25	17	43	1.85
91160--91230	33	2.2	33	89	0	106	47	16	23	11	1.79
91412--91466	22	2.5	22	81	0	74	20	16	40	23	1.91
91589--91670	40	2.1	40	81	6	96	23	15	23	37	1.93
91612--91804	20	9.6	20	83	3	219	19	20	25	35	1.96
91791--91873	21	4.0	21	73	6	78	25	16	24	33	1.96
91771--91869	42	2.4	43	77	11	100	21	18	23	37	1.94
92573--92628	28	2.0	28	100	0	112	28	28	7	35	1.84
92708--92743	15	2.5	15	90	4	56	69	0	0	30	0.89
98479--98600	59	2.0	60	83	7	151	38	13	6	41	1.70
110482--111022	275	2.0	276	91	2	888	43	10	11	34	1.76
115618--115650	2	16.5	2	100	0	66	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116893--116992	33	3.0	33	95	0	173	27	19	32	22	1.97
122498--122595	48	2.0	48	86	0	133	38	20	11	29	1.87
129347--129419	2	36.5	2	100	0	146	50	0	0	49	1.00
131785--131832	23	2.1	23	96	0	87	37	8	16	37	1.79
131900--132352	182	2.5	182	91	0	719	27	15	13	43	1.84
132223--132613	112	3.5	112	91	2	590	27	14	13	45	1.81
132398--132776	204	1.9	204	89	2	600	26	11	12	48	1.75
132506--132705	92	2.2	92	91	0	328	26	11	13	49	1.75
133736--133785	21	2.4	21	86	0	64	30	22	16	32	1.95
134200--134245	17	2.7	17	100	0	92	34	21	10	32	1.88
134595--134654	32	1.9	32	89	3	95	46	1	8	43	1.43
146034--146153	63	1.9	63	94	0	213	31	15	5	48	1.66
146129--146190	25	2.5	24	89	5	79	33	16	3	46	1.63
146131--146171	12	3.3	12	80	6	55	31	14	2	51	1.56
146143--146185	13	3.4	13	74	6	52	30	13	4	51	1.62
148594--148635	23	1.9	21	90	9	66	35	0	2	61	1.09
154500--154675	55	3.2	52	81	13	203	28	18	12	40	1.87
154519--154679	52	3.0	52	86	8	216	28	18	13	39	1.89
154519--154691	56	3.2	55	84	9	219	27	17	13	41	1.88

Tables:   1

The End!