genome.fa.s6103.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006103.1 Hibiscus syriacus cultivar Beakdansim tig00014463_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  206028

Tables:   1   2   

This is table  2  of  2  ( 167 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
154528--154712	102	1.8	102	85	2	264	29	17	13	39	1.88
154625--154748	36	3.4	36	81	3	151	26	20	14	38	1.91
154704--154861	63	2.4	67	84	6	198	34	21	7	36	1.82
155481--155937	105	4.3	107	90	3	647	33	26	18	21	1.97
155481--155936	211	2.1	212	88	2	666	33	26	18	21	1.96
156484--156585	34	2.8	37	88	10	158	43	14	13	28	1.84
156484--156619	37	3.8	35	83	9	159	41	13	13	30	1.84
156979--157079	53	1.9	53	88	8	152	31	3	1	62	1.25
157263--157304	9	4.7	9	80	11	50	21	2	2	73	1.06
157501--157548	2	24.0	2	100	0	96	50	0	0	50	1.00
160309--160340	16	2.0	16	100	0	64	50	6	6	37	1.53
161410--161492	42	2.0	42	85	0	112	25	13	21	39	1.90
165232--165269	20	1.9	20	88	0	58	23	28	0	47	1.52
165301--165353	26	2.2	23	86	10	70	28	1	0	69	0.99
166949--166982	16	2.1	16	89	10	52	55	0	5	38	1.24
166935--166989	26	2.1	26	89	0	83	54	0	5	40	1.23
168031--168093	15	4.2	15	89	0	99	31	33	20	14	1.92
168031--168093	30	2.1	30	96	0	117	31	33	20	14	1.92
168178--168255	29	2.7	29	98	2	149	17	21	15	44	1.86
168267--168301	12	2.9	12	91	0	52	37	25	5	31	1.80
168622--168783	64	2.5	64	84	0	207	26	20	21	31	1.98
169703--169732	10	3.0	10	90	0	51	26	0	0	73	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
185125--185192	2	37.0	2	80	16	76	45	0	0	54	0.99
187635--187669	19	1.9	18	88	11	54	74	2	0	22	0.95
187634--187687	21	2.4	24	78	12	69	74	1	1	22	1.02
189040--189074	17	2.1	16	89	5	52	80	0	5	14	0.89
189155--189541	38	10.5	37	80	11	352	44	7	4	43	1.52
189155--189547	39	10.6	37	81	9	353	44	7	4	43	1.51
190138--191015	84	10.5	84	78	5	733	25	19	23	31	1.98
190174--190995	168	4.9	168	82	3	897	25	19	23	31	1.98
190174--191006	252	3.3	247	79	5	809	25	19	23	31	1.98
192130--192390	95	2.7	93	84	7	319	31	18	18	32	1.95
195165--195203	19	2.1	19	85	0	51	58	0	17	23	1.38
195205--195276	18	3.8	18	75	18	67	70	1	4	23	1.12
195758--195840	33	2.5	31	81	14	96	45	4	1	48	1.31
195759--196141	39	10.5	37	84	10	402	45	6	3	44	1.47
196129--196158	2	15.5	2	93	6	53	46	0	0	53	1.00
196089--196192	48	2.1	49	86	11	144	46	9	1	42	1.47
199385--199654	41	6.6	41	91	4	347	21	19	22	36	1.95
199410--199564	20	7.6	20	69	4	121	18	21	23	37	1.94
199724--199762	6	6.5	6	100	0	78	33	51	15	0	1.44
200283--200536	20	12.6	20	78	11	241	41	20	22	15	1.90
200383--200493	41	2.7	41	94	4	188	38	23	19	18	1.93
200402--200473	22	3.4	22	73	11	87	37	25	19	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
200530--200578	21	2.3	21	92	0	80	32	26	14	26	1.94
201897--202032	63	2.2	63	80	7	143	36	19	18	26	1.94
202723--202844	32	3.9	30	77	10	102	31	15	18	33	1.93

Tables:   1   2

The End!