genome.fa.s6109.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006109.1 Hibiscus syriacus cultivar Beakdansim tig00014478_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80710

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2912--2946	18	1.9	18	94	0	61	54	25	2	17	1.57
3117--3192	20	3.8	20	88	6	111	32	21	18	27	1.96
3264--3321	20	2.9	20	84	0	80	12	17	25	44	1.83
3977--4014	20	1.9	20	84	10	51	55	2	13	28	1.51
3991--4052	25	2.4	25	78	5	61	62	3	4	29	1.31
5325--5528	85	2.4	85	91	0	336	26	16	20	36	1.94
5629--5870	85	2.8	85	85	6	285	26	19	20	34	1.96
6126--6300	65	2.7	67	83	8	224	26	14	19	38	1.91
11671--11708	20	1.9	20	89	10	60	55	0	15	28	1.41
11667--11714	20	2.5	20	78	21	57	60	4	12	22	1.49
11710--11773	29	2.3	28	81	10	69	56	0	6	37	1.25
11790--11836	20	2.3	20	85	7	60	74	2	8	14	1.15
13639--13682	2	22.5	2	95	4	81	50	0	0	50	1.00
13772--13817	22	2.0	23	83	8	58	13	13	0	73	1.09
14987--15022	4	9.0	4	88	11	56	25	0	0	75	0.81
26384--26432	2	25.0	2	95	4	91	48	0	0	51	1.00
26383--26443	8	8.3	7	87	12	63	44	1	0	54	1.10
26527--26562	19	1.9	18	88	5	54	5	13	0	80	0.88
27170--27228	23	2.5	23	80	2	64	54	10	6	28	1.59
27217--27249	16	2.0	17	88	5	50	63	0	0	36	0.95
34755--34793	17	2.5	15	80	15	51	35	12	17	33	1.88
34762--34794	17	1.9	17	100	0	66	42	12	12	33	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34998--35053	28	2.0	29	86	10	80	28	16	16	39	1.89
34998--35053	29	2.0	28	85	3	76	28	16	16	39	1.89
35145--35186	22	1.9	22	100	0	84	28	30	4	35	1.78
37923--37971	20	2.5	20	100	0	98	42	22	18	16	1.88
38605--38691	40	2.2	39	91	4	140	29	13	20	35	1.92
39709--39846	20	6.8	20	85	4	170	22	18	22	36	1.95
39832--39872	21	2.0	21	95	0	73	29	14	26	29	1.95
43301--43664	5	73.8	5	97	2	504	46	13	0	40	1.44
43668--43723	22	2.5	22	82	2	76	46	5	1	46	1.36
43711--43747	2	18.5	2	100	0	74	48	0	0	51	1.00
43769--43799	2	15.5	2	100	0	62	48	0	0	51	1.00
43787--43921	37	3.6	38	78	10	127	40	8	4	46	1.55
43694--43835	56	2.5	57	78	5	171	46	4	2	45	1.39
43927--44024	38	2.6	38	86	0	142	40	10	4	44	1.57
44244--44278	16	2.2	16	100	0	70	54	5	11	28	1.59
44711--45164	46	9.9	46	88	0	604	24	21	11	42	1.86
44751--45104	20	15.6	20	66	22	125	23	22	11	42	1.86
44711--45163	229	2.0	230	88	0	674	24	21	11	42	1.86
49097--49187	45	2.0	46	89	2	139	30	19	21	27	1.98
55804--55846	21	2.0	22	86	4	61	34	6	4	53	1.49
57772--57859	46	1.9	45	86	2	122	30	17	22	29	1.96
69713--69774	24	2.6	24	79	5	63	25	14	17	41	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74338--74369	13	2.5	13	100	0	64	53	6	0	40	1.26
74730--74769	21	1.9	21	89	0	62	10	25	40	25	1.86
74752--74809	23	2.8	21	84	12	75	18	25	34	20	1.96

Tables:   1

The End!