genome.fa.s6142.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006142.1 Hibiscus syriacus cultivar Beakdansim tig00014572_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  127956

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19923--19969	25	1.9	24	82	4	58	29	2	4	63	1.25
20565--20599	18	1.9	18	94	0	61	28	34	28	8	1.87
21438--21470	17	1.9	17	93	0	57	15	33	24	27	1.95
22017--22048	16	2.0	16	100	0	64	37	0	18	43	1.51
22015--22185	24	6.9	24	71	20	86	41	1	10	46	1.46
22010--22123	59	1.9	59	87	7	167	40	0	10	49	1.37
22064--22212	53	2.9	52	77	12	132	39	2	11	46	1.51
23202--23292	24	3.8	24	86	2	130	43	7	2	46	1.44
23198--23292	34	2.7	35	85	9	122	43	7	2	47	1.43
24782--24816	18	1.9	18	94	0	61	20	20	34	25	1.96
26369--26438	26	2.7	26	76	14	63	67	2	1	28	1.14
27493--27549	26	2.1	28	87	9	82	28	22	3	45	1.69
30815--30905	47	1.9	47	93	0	155	28	9	24	37	1.87
40634--40658	13	1.9	13	100	0	50	24	24	28	24	2.00
40672--40709	20	1.9	20	94	0	67	44	15	13	26	1.83
46526--46567	21	1.9	21	85	9	57	42	16	19	21	1.89
47671--47716	22	2.1	22	100	0	92	30	8	39	21	1.84
48467--48511	23	2.0	23	90	0	72	42	8	15	33	1.78
48428--48592	87	1.9	87	89	0	258	44	10	10	33	1.75
48551--48602	23	2.3	23	100	0	104	42	7	15	34	1.75
48574--48786	87	2.4	86	91	4	338	40	10	15	33	1.81
48661--48710	23	2.2	23	85	7	66	38	8	22	32	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48471--48702	110	2.1	110	89	1	358	41	9	14	34	1.79
48428--48786	197	1.8	197	92	1	603	42	10	13	33	1.79
48804--49246	199	2.2	197	84	4	595	31	15	13	39	1.86
49513--49785	124	2.2	125	88	0	395	39	14	13	32	1.85
53781--53807	14	1.9	14	100	0	54	44	25	0	29	1.54
60958--61001	4	11.0	4	95	0	79	0	27	0	72	0.85
63249--63327	25	3.2	24	79	12	81	21	26	25	26	1.99
69826--69886	31	2.0	31	93	3	106	40	0	24	34	1.55
70088--70135	24	2.0	25	87	4	71	25	20	25	29	1.99
72206--72244	20	2.0	20	90	10	62	20	33	23	23	1.97
73047--73096	24	2.1	24	85	7	66	22	2	16	60	1.46
79627--79652	12	2.2	12	100	0	52	7	7	0	84	0.77
79955--79997	20	2.1	21	83	8	54	16	13	0	69	1.19
83198--83247	24	2.1	24	85	7	66	22	2	16	60	1.46
84740--84815	20	3.8	20	78	0	80	22	31	18	27	1.97
85009--85048	20	1.9	22	90	10	66	42	40	5	12	1.64
87805--88165	136	2.6	136	84	5	453	24	33	16	25	1.96
87817--88010	46	4.3	44	66	13	108	23	36	14	25	1.93
88108--88215	46	2.3	46	84	3	137	27	36	13	22	1.92
95911--95978	31	2.2	31	87	10	95	27	8	11	51	1.68
96119--96182	27	2.4	27	86	0	83	56	0	3	40	1.15
96140--96232	25	3.7	25	80	17	104	53	0	3	43	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96896--96944	24	2.0	24	84	7	64	46	0	2	51	1.12
98442--98499	22	2.6	22	77	17	57	62	1	1	34	1.16
99327--99405	38	2.1	38	97	2	151	64	0	11	24	1.26
99723--99871	33	4.5	33	94	2	246	27	12	20	39	1.88
100323--100921	84	7.2	84	75	6	443	25	18	24	32	1.97
100424--100883	165	2.8	164	80	4	521	26	18	22	32	1.97
100996--101646	110	6.0	110	90	1	987	24	17	23	34	1.96
105396--105429	14	2.5	13	90	9	59	61	0	0	38	0.96
105410--105472	26	2.5	26	76	19	62	65	0	4	30	1.13
105805--105888	33	2.5	33	85	11	102	26	13	21	39	1.90
105822--105888	33	2.0	33	91	5	109	25	10	22	41	1.85
105942--105988	3	15.7	3	83	16	62	70	0	0	29	0.88
106497--106591	31	3.1	31	63	19	74	37	10	15	35	1.82
106489--106624	60	2.3	60	88	5	195	33	13	16	37	1.87
106742--106947	100	2.0	101	91	2	333	31	13	13	41	1.83
107256--107319	26	2.5	25	78	14	60	50	7	4	37	1.52
115499--115818	124	2.6	122	83	3	374	28	18	17	36	1.93
126885--126926	21	2.0	21	85	0	57	28	0	7	64	1.20

Tables:   1

The End!