Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006160.1 Hibiscus syriacus cultivar Beakdansim tig00014635_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77909

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
952--976
13
1.9
13
100
0
50
52
0
8
40
1.31
10575--10614
21
1.9
21
85
10
55
35
10
2
52
1.48
14202--14246
2
24.0
2
78
13
51
44
2
0
53
1.13
14231--14358
38
3.4
37
79
11
116
44
3
7
43
1.51
14309--14426
61
1.9
62
81
13
147
42
5
6
44
1.55
14370--14493
35
3.5
35
82
5
133
43
4
4
47
1.43
15569--15630
3
21.3
3
76
15
51
25
4
1
67
1.19
15659--15710
16
3.3
16
94
2
88
46
9
0
44
1.36
15807--15869
33
1.9
32
84
9
83
23
4
1
69
1.16
15951--16051
37
2.7
37
71
10
89
14
8
4
71
1.28
19411--19654
95
2.7
94
84
10
314
30
19
18
31
1.96
20799--21922
84
13.6
82
78
6
1022
30
24
19
25
1.98
20799--21922
164
6.8
164
82
4
1034
30
24
19
25
1.98
22512--22561
20
2.5
20
86
3
64
36
4
0
60
1.16
22547--22687
38
3.8
38
74
20
111
42
4
7
45
1.53
22589--22813
37
6.5
33
71
20
144
43
5
4
46
1.47
22648--22709
26
2.4
26
78
10
65
40
6
6
46
1.55
24232--24276
17
2.6
17
86
10
56
15
4
2
77
1.02
24240--24362
4
28.8
4
68
19
54
17
7
4
70
1.26
24271--24309
14
2.8
14
85
11
53
17
7
5
69
1.32
25503--25556
24
2.2
24
90
6
83
35
27
18
18
1.94
26243--26291
20
2.5
20
86
0
62
28
28
14
28
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28624--28678
18
3.1
18
85
12
69
21
1
0
76
0.88
28618--28672
29
1.9
28
85
3
74
27
1
0
70
0.97
28652--28685
17
2.1
17
94
5
61
17
5
0
76
0.98
28618--28656
6
6.7
6
85
5
53
30
0
0
69
0.89
30258--30283
2
13.0
2
100
0
52
50
0
0
50
1.00
36847--36880
2
17.0
2
100
0
68
50
0
0
50
1.00
41317--41374
29
1.9
31
93
6
102
24
12
20
43
1.86
53582--53622
16
2.8
14
88
7
55
51
12
19
17
1.76
53582--53625
14
2.9
15
90
6
63
50
13
20
15
1.78
72385--72507
60
2.0
60
87
0
174
27
18
19
34
1.95
73843--73949
32
3.4
32
77
12
130
30
18
16
33
1.94
73815--73969
63
2.5
63
94
0
274
31
18
15
34
1.92
73774--73969
31
6.3
31
74
14
154
31
18
16
32
1.94
77062--77214
65
2.5
59
86
8
216
33
16
16
32
1.92
77093--77194
32
3.2
31
75
18
109
34
15
16
33
1.91
77106--77211
32
3.3
31
75
15
108
33
16
17
32
1.92

Tables:   1

The End!