genome.fa.s6169.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006169.1 Hibiscus syriacus cultivar Beakdansim tig00014656_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78899

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
320--356	12	3.0	12	88	4	56	29	2	2	64	1.21
1981--2018	16	2.5	15	87	12	51	31	7	0	60	1.25
2508--2564	29	2.1	27	80	9	62	57	7	21	14	1.60
13687--13818	67	2.0	67	90	0	210	31	13	24	31	1.94
17153--17206	26	2.1	25	83	13	65	38	1	1	57	1.20
18317--18367	24	2.1	24	100	0	102	27	29	15	27	1.96
20830--21144	157	2.0	157	98	0	603	40	18	7	33	1.79
27431--27469	20	2.0	20	85	10	53	25	25	12	35	1.92
31376--31472	23	4.3	23	85	8	123	30	26	19	22	1.98
31376--31472	46	2.2	44	87	12	137	30	26	19	22	1.98
35681--35784	50	2.1	50	96	0	190	44	4	16	34	1.69
35952--35984	18	1.9	17	88	11	50	48	9	21	21	1.77
52100--52234	61	2.2	61	97	0	252	15	22	22	39	1.92
52179--52274	41	2.3	41	78	3	104	16	21	19	41	1.90
59727--59831	31	3.4	31	87	1	147	10	22	32	34	1.88
59727--59845	31	3.8	31	83	5	116	11	25	31	31	1.91
66838--66903	31	2.1	31	85	0	87	22	46	15	15	1.82
66857--66896	18	2.2	18	90	0	62	20	50	17	12	1.78
66844--66879	13	2.8	13	91	0	54	19	50	16	13	1.79
69353--69448	24	4.0	24	76	12	83	20	13	15	50	1.78
70377--70445	30	2.3	30	80	9	79	40	8	20	30	1.82
72573--72744	25	7.5	25	61	31	71	37	6	23	31	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72537--72761	45	5.0	45	95	0	380	38	7	23	31	1.81
77844--77868	10	2.5	10	100	0	50	28	20	8	44	1.79

Tables:   1

The End!