Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006175.1 Hibiscus syriacus cultivar Beakdansim tig00014681_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48721

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2659--2823
64
2.6
64
80
7
176
35
19
18
26
1.95
2695--2818
65
1.9
64
83
8
162
37
18
17
25
1.93
3305--3340
17
2.0
19
89
10
58
44
5
11
38
1.63
3474--3566
30
3.1
30
76
11
91
25
18
22
33
1.97
3495--3599
30
3.5
30
80
1
93
23
19
24
32
1.97
6402--6560
64
2.5
63
85
3
203
34
19
20
25
1.96
7231--7303
30
2.4
30
86
2
92
28
16
23
31
1.96
7232--7337
30
3.5
30
79
3
88
24
17
24
33
1.97
9040--9082
21
2.0
21
81
0
50
30
30
25
13
1.94
9062--9212
69
2.3
66
87
4
205
27
27
27
17
1.97
9515--9587
29
2.5
29
90
2
110
39
9
12
38
1.76
9881--9948
22
3.0
22
95
2
118
20
26
26
26
1.99
16059--16126
22
3.0
22
97
2
127
19
26
27
26
1.99
22162--22204
21
2.0
21
81
0
50
30
30
25
13
1.94
22184--22335
69
2.3
67
88
3
216
26
27
28
17
1.97
22638--22710
29
2.5
29
88
2
101
39
9
10
39
1.73
23004--23071
22
3.0
22
97
2
127
19
26
27
26
1.99
27726--27764
6
6.5
6
93
0
69
17
64
0
17
1.30
27870--27921
13
3.8
13
78
14
52
65
0
0
34
0.93
29319--29395
29
2.7
29
89
0
118
22
28
36
12
1.91
29392--29447
26
2.2
26
93
0
94
17
17
35
28
1.93
31539--31572
13
2.7
13
90
4
52
0
32
0
67
0.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33792--33819
14
2.0
14
100
0
56
42
14
35
7
1.73
34120--34153
14
2.5
13
90
4
50
0
29
0
70
0.87
34124--34161
11
3.4
11
89
7
58
2
26
0
71
1.00
45557--45607
2
25.5
2
100
0
102
50
0
0
49
1.00

Tables:   1

The End!