Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006226.1 Hibiscus syriacus cultivar Beakdansim tig00014839_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70658

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3483--3516
16
2.1
17
88
5
52
70
8
11
8
1.34
4117--4198
37
2.3
35
89
6
121
42
18
2
36
1.63
10301--10343
22
2.0
21
86
4
59
53
2
2
41
1.26
12662--12702
10
4.1
10
84
12
57
31
29
0
39
1.57
18491--18530
20
2.0
21
85
14
57
42
5
7
45
1.54
39285--39328
21
2.1
21
86
0
61
9
38
15
36
1.80
40087--40120
12
2.8
12
100
0
68
41
8
8
41
1.67
50645--51516
434
2.0
435
95
0
1575
30
21
15
32
1.95
52127--52178
24
2.2
24
96
0
95
15
19
11
53
1.71
54201--54232
12
2.4
14
90
10
50
3
40
3
53
1.33
54780--54838
32
1.9
31
86
6
84
32
18
16
32
1.94
56864--56945
44
1.9
41
87
7
119
31
6
29
32
1.82
56866--56956
19
4.4
20
76
17
105
35
5
28
30
1.80
56998--57175
65
2.7
65
97
0
338
38
11
20
30
1.87
57434--57522
21
4.3
21
80
5
110
32
25
20
21
1.97
60069--60173
24
4.4
24
88
0
138
40
20
12
25
1.88
60069--60173
48
2.2
48
89
0
156
40
20
12
25
1.88
60093--60193
48
2.1
48
83
3
123
44
19
12
22
1.85
64514--64541
2
14.0
2
100
0
56
50
0
0
50
1.00
64723--64837
24
4.8
24
87
7
99
40
20
16
22
1.91
64737--64834
48
2.0
48
92
3
162
39
20
17
22
1.92
64751--64851
48
2.1
48
85
7
134
42
19
15
21
1.89

Tables:   1

The End!