Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006276.1 Hibiscus syriacus cultivar Beakdansim tig00014968_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97707

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6602--6639
18
2.1
18
100
0
76
28
21
34
15
1.94
11279--11325
15
3.1
15
90
0
76
8
17
65
8
1.44
14542--14567
2
13.0
2
100
0
52
50
0
0
50
1.00
20593--20618
2
13.0
2
100
0
52
50
0
0
50
1.00
31393--31630
37
6.6
35
78
10
205
44
3
5
46
1.44
31397--31645
36
6.8
36
79
12
201
43
3
5
47
1.42
31697--31791
29
3.3
27
74
20
79
21
0
4
74
0.98
31698--31782
11
7.2
11
73
25
50
22
0
4
72
1.02
33118--33163
18
2.6
17
80
10
56
19
8
0
71
1.11
33275--33305
15
2.1
15
94
5
55
12
3
0
83
0.75
38484--39048
84
6.8
84
79
3
566
31
23
18
26
1.97
38484--39054
249
2.3
250
84
4
736
31
23
19
25
1.98
39592--39653
30
2.1
30
84
0
79
43
3
8
45
1.49
39651--39733
36
2.3
36
79
10
89
44
4
8
42
1.56
39686--39852
82
2.1
82
82
7
200
45
5
5
43
1.51
39782--39842
12
5.1
12
74
7
61
42
6
4
45
1.51
39769--39900
36
3.6
36
88
4
185
43
5
4
46
1.46
47724--47753
13
2.3
13
100
0
60
16
0
0
83
0.65
48925--48966
2
21.0
2
100
0
84
50
0
0
50
1.00
50181--50245
29
2.2
31
81
10
73
40
6
20
33
1.77
50237--50279
18
2.6
16
80
16
52
46
4
18
30
1.69
51383--51412
6
4.8
6
92
8
51
20
0
0
80
0.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51383--51412
13
2.4
12
94
5
51
20
0
0
80
0.72
53574--53650
31
2.5
31
82
2
100
28
31
25
14
1.95
53527--53650
63
2.0
63
82
6
153
26
29
27
16
1.97
54539--54591
5
9.8
5
76
15
52
7
22
50
18
1.72
54532--54592
17
3.3
17
79
20
77
11
22
47
18
1.80
54525--54591
22
3.0
22
93
4
107
11
23
46
17
1.82
54590--54703
19
5.9
19
81
11
106
31
28
24
14
1.95
54632--54705
9
7.7
9
74
14
58
31
28
27
13
1.94
54588--54705
38
3.1
37
80
11
123
30
27
26
15
1.96
54632--54706
29
2.5
31
89
8
120
30
28
26
14
1.95
60896--61019
63
2.0
63
84
6
162
27
29
26
16
1.97
60896--61019
31
3.9
32
75
4
110
27
29
26
16
1.97
61895--61933
17
2.3
17
100
0
78
12
23
46
17
1.83
61935--62028
19
4.8
19
84
8
118
30
28
24
15
1.96
61929--62027
9
10.3
9
80
10
99
30
28
26
15
1.96
61954--62028
29
2.6
28
86
2
78
30
28
25
16
1.96
65952--66067
61
1.9
61
92
0
196
26
18
30
24
1.98
71257--71287
11
2.8
11
95
0
53
35
12
3
48
1.58
72503--72624
64
1.9
63
86
1
172
18
26
29
25
1.98
72503--72624
32
3.9
31
84
4
145
18
26
29
25
1.98
96263--96397
56
2.4
56
79
10
150
40
7
10
42
1.67

Tables:   1

The End!