genome.fa.s6280.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006280.1 Hibiscus syriacus cultivar Beakdansim tig00014991_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69864

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
992--1031	21	1.9	21	90	10	64	50	2	5	42	1.37
1582--1617	18	2.1	18	89	5	56	55	0	5	38	1.23
1949--1985	19	1.9	19	94	0	65	40	10	8	40	1.70
2311--2427	21	5.6	21	92	0	180	29	27	19	23	1.98
2436--2620	21	8.9	21	81	8	182	24	21	23	31	1.98
2481--2620	62	2.3	62	83	9	178	23	22	22	32	1.98
2433--2627	62	3.1	60	76	9	176	26	21	22	30	1.99
2457--2627	83	2.1	82	80	6	184	24	22	22	30	1.99
2710--2750	5	7.5	6	91	8	54	29	53	17	0	1.44
3252--3292	6	6.8	6	97	0	55	0	17	58	24	1.38
3253--3297	6	7.5	6	94	0	54	2	15	55	26	1.52
3387--3551	21	7.9	21	76	9	133	32	21	20	24	1.98
3387--3467	41	2.0	40	85	11	110	34	18	22	24	1.96
3412--3527	41	2.8	41	79	8	119	32	22	20	24	1.98
3533--3594	20	3.1	19	75	20	72	22	22	19	35	1.96
3379--3599	104	2.1	103	79	8	252	29	20	20	28	1.98
3739--3867	21	6.2	21	80	7	147	31	24	20	24	1.98
3736--3855	41	2.9	41	81	8	127	33	22	20	23	1.97
3869--3937	20	3.4	20	74	18	79	24	18	18	37	1.94
3858--3999	41	3.4	41	84	6	155	24	21	21	33	1.97
3780--3999	21	10.6	21	76	13	77	26	22	20	29	1.99
6391--6416	13	2.0	13	100	0	52	23	0	7	69	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8673--8735	23	2.7	23	87	5	90	33	20	19	26	1.96
9110--9205	24	4.0	23	83	5	120	37	19	15	27	1.92
9110--9205	47	2.0	48	85	2	131	37	19	15	27	1.92
8674--9583	470	1.9	470	95	0	1649	37	16	15	30	1.90
11474--11511	10	3.9	10	83	16	53	21	23	36	18	1.95
11475--11523	19	2.5	19	90	3	71	20	28	36	14	1.92
15739--16190	224	2.0	226	91	1	728	26	31	8	32	1.87
19428--19474	14	3.4	14	93	0	76	36	0	25	38	1.56
21938--21971	11	3.2	11	91	4	52	79	0	0	20	0.73
21944--22034	18	5.3	18	66	19	52	73	3	4	18	1.14
22012--22085	16	4.8	16	68	25	52	66	2	1	29	1.14
22712--22812	37	2.7	37	87	3	141	28	14	14	41	1.86
23473--23901	106	4.0	106	93	1	700	23	17	23	35	1.95
25796--25846	16	3.2	17	81	8	54	0	17	7	74	1.05
25797--25855	22	2.5	25	81	10	70	0	16	8	74	1.05
25827--25863	10	3.5	11	89	10	60	0	13	8	78	0.96
28027--28100	21	3.5	21	88	3	114	24	22	16	36	1.94
27998--28222	41	5.5	41	71	10	140	29	20	17	31	1.96
28090--28285	21	9.6	21	69	10	86	35	18	20	25	1.95
28090--28296	20	10.2	20	72	11	127	35	18	20	25	1.95
28296--28366	21	3.4	21	70	18	76	15	21	26	36	1.93
28293--28396	41	2.5	41	100	0	208	15	22	25	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28317--28386	20	3.5	20	70	18	72	12	22	24	40	1.89
29154--29248	20	4.6	20	73	17	95	41	24	24	10	1.86
29104--29223	41	3.0	41	95	3	208	40	23	21	15	1.91
29195--29247	22	2.5	22	90	6	83	41	24	26	7	1.81
30504--30580	30	2.5	30	76	4	73	67	2	11	18	1.33
30679--30717	18	2.1	18	85	4	51	74	0	5	20	1.01
30795--30826	2	16.0	2	100	0	64	50	0	0	50	1.00
31416--31514	37	2.7	37	80	1	137	30	10	18	41	1.83
32913--33340	55	7.8	54	89	3	601	36	10	16	35	1.84
34076--34126	17	3.0	17	100	0	102	23	23	17	35	1.95
45242--45281	21	2.0	20	85	5	53	15	22	15	47	1.82
45720--45917	109	1.8	109	84	4	274	27	13	20	38	1.89
46815--46907	7	12.1	7	73	24	64	77	4	17	1	0.99
46815--46896	16	5.9	13	70	18	51	75	4	18	1	1.04
46835--46902	18	3.8	18	75	12	59	77	2	17	1	0.96
46853--46907	22	2.5	22	85	5	76	81	1	16	0	0.77
48062--48414	81	4.4	81	89	1	512	39	12	21	26	1.89
48396--48574	45	4.0	45	90	0	268	40	14	21	24	1.90
51603--51857	81	3.2	81	88	1	352	42	10	19	27	1.84
51859--52217	45	8.0	45	89	0	520	40	13	22	23	1.90
55349--55475	67	1.9	67	95	1	229	25	17	17	40	1.91
55397--55565	89	1.9	89	90	1	268	30	18	13	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55562--55977	139	3.0	139	84	2	532	30	28	14	25	1.95
58352--58383	16	1.9	17	93	6	57	43	12	0	43	1.42
58806--58843	20	1.9	20	84	10	51	55	0	2	42	1.14
59877--59965	31	2.8	32	81	8	94	26	26	23	22	2.00
59859--59994	32	4.3	32	76	10	118	27	27	25	19	1.99
60319--60916	314	1.9	315	94	0	1045	36	12	16	33	1.87
62292--62330	18	2.2	18	90	0	60	30	25	20	23	1.98
65401--65458	25	2.3	26	88	8	84	39	13	15	31	1.86
69521--69566	25	1.9	23	86	8	65	54	0	6	39	1.26

Tables:   1

The End!