Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006292.1 Hibiscus syriacus cultivar Beakdansim tig00015033_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74885

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6962--7063
41
2.4
44
82
9
124
27
12
4
54
1.58
6962--7104
43
3.4
43
76
10
134
27
15
3
53
1.58
7115--7343
45
5.1
44
76
10
189
27
18
6
47
1.74
7222--7371
43
3.5
42
80
8
149
28
19
8
44
1.79
7005--7431
45
9.8
44
68
13
152
26
18
5
48
1.71
13295--13397
31
3.3
30
79
5
125
37
3
17
40
1.68
17241--17290
25
2.0
24
81
11
57
40
12
2
46
1.52
18100--18201
21
4.9
21
81
0
114
1
31
22
44
1.64
18099--18201
42
2.5
41
84
4
134
1
31
22
44
1.64
18104--18212
42
2.6
42
81
11
118
1
32
20
45
1.61
20246--20343
20
4.6
20
65
18
54
55
0
1
43
1.06
20272--20306
18
1.9
18
94
0
61
54
0
2
42
1.15
20258--20332
38
2.0
38
81
5
89
54
0
1
44
1.08
20280--20333
18
2.9
18
76
10
54
57
0
1
40
1.09
20259--20649
186
2.1
184
89
2
599
43
2
7
45
1.46
25468--25500
16
2.1
16
94
0
57
60
24
9
6
1.49
25564--25602
16
2.4
16
91
0
69
56
20
12
10
1.65
26694--26739
14
3.3
14
90
0
74
47
26
17
8
1.76
29915--29975
9
6.9
9
77
17
65
65
1
31
1
1.12
36996--37070
21
3.6
21
77
10
82
22
20
17
40
1.92
36979--37052
20
3.7
20
75
12
71
20
20
18
40
1.92
36979--37077
41
2.5
40
83
3
135
24
20
18
37
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37060--37193
20
6.7
20
87
3
171
40
18
20
20
1.92
37060--37193
61
2.2
61
85
4
173
40
18
20
20
1.92
37743--37793
19
2.6
20
81
3
68
45
23
19
11
1.83
37824--37878
14
3.6
14
73
21
56
9
21
21
47
1.78
37824--37886
33
1.9
33
100
0
126
9
22
19
49
1.76
39555--39832
94
3.1
92
86
7
390
21
12
18
47
1.82
39927--39984
19
3.0
20
76
5
73
48
18
20
12
1.80
39921--40044
33
3.5
35
80
11
130
47
21
20
10
1.80
39950--40044
33
2.8
33
87
1
136
47
24
18
9
1.78
40564--40630
21
3.2
21
66
6
55
23
35
20
19
1.95
40517--40630
42
2.7
41
81
5
104
22
35
19
21
1.96
41981--42017
14
2.6
14
86
0
56
32
2
21
43
1.67
42162--42312
19
8.7
19
63
21
71
13
23
17
45
1.84
42166--42292
33
3.8
33
89
4
193
13
24
16
45
1.83
42286--42358
20
3.6
20
70
17
60
23
17
24
34
1.96
44834--44887
24
2.2
24
93
0
90
40
20
18
20
1.91
44834--44901
24
2.8
24
84
0
64
38
20
17
23
1.93
45794--45838
21
2.1
21
87
0
63
37
17
26
17
1.93
46441--46496
25
2.2
26
80
3
69
37
8
0
53
1.32
56546--56576
15
2.1
15
100
0
62
41
25
25
6
1.79
58056--58103
23
2.0
25
84
11
66
25
0
4
70
1.04
65742--65828
45
1.9
45
88
4
131
32
16
17
34
1.92

Tables:   1

The End!