genome.fa.s6307.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006307.1 Hibiscus syriacus cultivar Beakdansim tig00015071_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25881

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2--801	176	4.7	170	77	9	610	29	21	12	36	1.90
918--994	39	2.0	38	89	2	118	31	15	10	42	1.81
1092--1497	167	2.4	170	83	5	475	29	19	11	39	1.87
1255--1743	248	2.0	248	84	4	637	31	20	10	38	1.86
1503--2949	171	8.4	170	70	10	764	29	20	12	38	1.88
1094--1910	419	2.0	416	81	3	980	30	19	11	38	1.87
2372--2448	39	2.0	39	92	2	129	28	14	11	45	1.80
2484--2950	167	2.7	166	80	5	425	30	19	13	36	1.90
2545--2950	167	2.4	170	83	4	455	29	19	11	39	1.87
2708--3196	248	2.0	248	84	4	637	30	20	10	38	1.87
3830--3907	39	2.0	39	89	0	120	30	16	8	43	1.79
2956--7182	172	24.4	172	71	8	2399	29	20	12	37	1.89
5214--5291	39	2.0	39	90	5	122	29	16	10	43	1.81
5513--6469	343	2.8	341	81	4	1014	29	21	12	36	1.90
6600--6677	39	2.0	39	89	0	120	30	15	10	43	1.80
6655--7182	168	3.1	167	81	5	535	28	20	12	38	1.90
6938--7427	248	2.0	249	84	2	637	30	20	11	38	1.87
8064--8141	39	2.0	39	92	0	129	28	15	11	44	1.81
7187--10909	172	21.5	171	73	9	2356	29	20	12	37	1.89
9623--9700	39	2.0	39	94	0	138	29	17	10	42	1.83
8263--22870	520	28.7	512	68	14	3956	29	20	12	37	1.90
10969--11043	38	2.0	38	91	0	123	32	13	10	44	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11023--16047	172	29.3	170	74	8	3457	29	20	12	37	1.90
11023--17341	343	18.5	347	73	10	4305	29	20	12	37	1.90
13021--13098	39	2.0	39	94	0	138	29	17	10	42	1.83
8257--14491	692	9.1	670	73	11	3592	29	21	12	37	1.90
9907--14445	344	13.3	346	72	10	1341	29	21	12	37	1.90
16132--16209	39	2.0	39	94	0	138	29	17	10	42	1.83
7195--14491	348	21.3	340	70	12	2562	29	20	12	37	1.90
16249--17341	172	6.4	171	78	6	1012	29	20	12	36	1.90
17458--17535	39	2.0	39	94	0	138	29	15	10	44	1.79
17575--22870	169	31.4	171	71	11	2961	29	20	12	37	1.90
18967--19041	39	1.9	39	91	0	123	30	12	10	46	1.75
19597--21960	505	4.7	498	73	11	1630	29	20	12	37	1.90
20140--22308	337	6.5	335	73	12	888	29	20	13	37	1.90
22886--22919	17	2.0	17	100	0	68	47	17	0	35	1.48
23655--24472	333	2.5	330	79	9	814	30	20	11	37	1.88
24327--24642	168	1.9	170	82	7	410	30	19	13	36	1.91
25101--25416	170	1.9	171	82	3	404	27	19	14	38	1.90

Tables:   1

The End!