genome.fa.s6324.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006324.1 Hibiscus syriacus cultivar Beakdansim tig00015112_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  151099

Tables:   1   

This is table  1  of  1  ( 76 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
377--408	16	1.9	16	93	6	55	68	3	0	28	1.04
3422--3470	22	2.2	23	85	10	66	55	12	22	10	1.66
3422--3486	23	2.8	24	81	9	73	47	12	24	15	1.79
5328--5363	2	18.0	2	100	0	72	50	0	0	50	1.00
5552--5579	14	2.0	14	100	0	56	42	0	0	57	0.99
13579--13683	37	2.8	37	80	0	129	40	14	13	32	1.84
14149--14201	23	2.2	24	80	12	65	35	5	0	58	1.22
14396--14437	22	2.0	22	81	13	52	21	2	9	66	1.32
14543--14601	4	14.2	4	80	16	59	20	5	0	74	1.00
17642--17692	16	3.3	15	81	8	57	82	5	11	0	0.83
17642--17704	23	2.8	23	88	7	85	80	6	12	0	0.88
17648--17705	14	4.4	14	71	24	54	81	6	12	0	0.88
18347--18423	22	3.5	22	90	0	127	38	25	14	20	1.91
19160--19494	106	3.2	106	92	0	571	33	25	17	23	1.96
20241--20337	37	2.6	37	83	0	131	41	15	12	30	1.84
20781--20927	65	2.3	66	76	15	162	31	4	2	61	1.31
20817--20905	19	4.6	19	69	20	60	33	3	2	60	1.25
21222--21262	4	10.2	4	84	10	57	21	4	0	73	1.02
21813--21848	16	2.2	16	100	0	72	27	0	44	27	1.55
24223--24320	39	2.5	39	80	9	128	18	27	20	33	1.96
26995--27028	2	17.5	2	87	6	52	44	0	0	55	0.99
27049--27097	23	2.1	23	84	3	62	10	12	14	63	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27545--27583	18	2.0	20	90	9	64	0	12	30	56	1.37
27557--27586	15	2.1	15	93	6	53	0	13	26	60	1.34
27975--28006	10	3.1	10	91	8	55	18	31	31	18	1.95
28768--28831	30	2.1	30	85	5	85	9	29	25	35	1.87
28900--28928	5	6.0	5	96	4	51	0	41	41	17	1.49
33201--33251	22	2.3	22	93	0	84	31	25	25	17	1.97
33209--33253	22	2.0	22	100	0	90	26	26	26	20	1.99
33492--33561	29	2.4	29	92	0	113	38	12	10	38	1.77
33864--34015	68	2.2	68	89	3	227	17	27	27	26	1.98
40077--40121	22	2.0	22	91	0	72	26	26	24	22	2.00
40341--40398	30	1.9	31	89	3	91	31	24	6	37	1.82
40415--40486	29	2.5	29	93	0	117	38	12	9	38	1.76
40789--40941	67	2.3	67	85	6	193	18	28	26	26	1.98
45926--46034	53	2.1	53	91	0	173	49	14	9	26	1.73
46016--46098	31	2.7	30	83	12	98	31	25	7	36	1.83
46035--46098	31	2.1	31	91	5	103	25	28	7	39	1.83
48121--48155	6	6.0	6	96	3	63	31	51	17	0	1.45
48753--48840	6	14.7	6	100	0	176	0	15	50	34	1.45
48951--49013	21	3.0	21	65	4	56	38	28	17	15	1.91
49054--49105	22	2.5	20	85	11	77	42	25	25	7	1.81
53366--53411	3	15.3	3	100	0	92	34	0	0	65	0.93
53937--53977	14	2.7	15	81	11	57	80	7	12	0	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57070--57111	15	3.0	14	83	10	50	19	19	7	54	1.66
57155--57191	18	2.1	17	95	5	65	16	8	5	70	1.30
62842--63151	114	2.7	113	90	1	476	31	14	20	33	1.93
65675--65732	22	2.6	22	88	0	89	32	15	13	37	1.87
66151--66829	113	5.9	113	85	6	904	40	14	18	27	1.89
67686--67718	13	2.5	13	86	13	50	81	3	15	0	0.80
72498--72572	36	2.1	36	85	9	100	48	1	2	48	1.24
77033--77076	22	2.0	22	95	0	79	36	20	22	20	1.95
77146--77186	21	2.0	21	90	9	66	36	0	0	63	0.95
89446--89474	6	4.8	6	100	0	58	82	0	0	17	0.66
89671--89710	17	2.4	17	87	4	55	55	2	5	37	1.35
91779--91824	21	2.2	21	84	3	58	47	26	15	10	1.78
92778--92822	23	2.0	23	86	0	63	26	26	26	20	1.99
92790--93105	150	2.1	149	95	1	562	34	21	17	26	1.95
99728--99772	23	2.0	23	86	0	63	26	26	26	20	1.99
99740--100055	150	2.1	149	94	1	553	34	21	17	26	1.95
103715--103749	18	1.9	18	88	0	52	51	14	11	22	1.74
110549--110589	10	4.1	10	83	0	55	29	29	0	41	1.56
110631--110669	19	2.1	19	90	4	62	28	2	2	66	1.18
120929--121000	26	3.0	24	68	27	62	26	6	4	62	1.39
121040--121098	31	2.0	29	87	12	84	28	6	11	52	1.63
123818--123952	33	4.2	31	73	10	94	37	4	11	47	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124089--124148	32	1.9	32	86	3	86	36	3	6	53	1.44
125573--125607	2	18.0	2	88	5	54	51	0	0	48	1.00
126584--126667	38	2.2	38	89	0	123	36	7	1	54	1.35
126632--126672	17	2.4	17	87	4	55	43	4	2	48	1.37
126755--126783	2	14.5	2	100	0	58	48	0	0	51	1.00
128292--128326	15	2.3	15	90	0	52	51	5	8	34	1.56
128300--128331	15	2.1	15	94	0	55	46	6	9	37	1.61
138686--138730	14	2.9	16	87	9	67	17	22	11	48	1.78
141914--141946	17	2.0	17	88	5	50	33	42	3	21	1.68
147313--147409	33	2.9	33	89	0	149	38	11	16	34	1.84

Tables:   1

The End!