genome.fa.s6349.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006349.1 Hibiscus syriacus cultivar Beakdansim tig00015185_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96509

Tables:   1   

This is table  1  of  1  ( 84 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2615--2646	16	1.9	17	93	6	57	6	9	0	84	0.78
16182--16229	23	2.0	24	84	4	62	62	0	29	8	1.24
17100--17158	3	19.7	3	93	6	102	33	0	0	66	0.92
19641--19699	24	2.4	24	82	5	64	38	5	5	50	1.46
28144--28187	12	3.8	12	84	6	54	25	11	9	54	1.65
31823--31866	10	4.4	10	88	0	61	9	2	4	84	0.85
33019--33085	27	2.5	28	76	9	68	62	4	22	10	1.45
34049--34083	12	3.0	12	87	8	54	20	8	8	62	1.49
39936--39982	12	4.0	12	83	5	60	25	10	8	55	1.62
46298--46440	74	1.9	72	87	6	207	37	14	15	32	1.88
46453--46610	21	7.8	20	72	7	86	38	25	17	18	1.92
46577--46826	20	12.5	20	85	1	250	37	24	18	19	1.94
47500--47546	24	2.0	24	87	8	69	25	14	21	38	1.92
47719--47743	12	2.1	12	100	0	50	72	0	28	0	0.86
50074--50171	19	5.4	19	84	13	143	14	22	17	45	1.84
50055--50171	53	2.2	53	98	1	227	13	23	17	44	1.85
50248--50302	14	3.6	14	73	21	56	45	20	23	10	1.82
50230--50321	33	2.8	33	98	1	175	44	18	23	13	1.85
50262--50377	51	2.2	52	93	1	198	43	18	21	16	1.87
50384--50483	19	5.5	19	84	12	147	15	23	17	45	1.85
50367--50483	53	2.2	53	95	1	209	14	24	17	43	1.86
50590--50626	14	2.6	14	91	0	65	45	21	0	32	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52015--52137	42	2.9	41	79	7	113	22	17	36	22	1.95
52588--52644	14	3.7	14	77	20	60	45	22	21	10	1.82
52569--52661	33	2.8	33	95	0	168	47	21	20	10	1.80
52532--52666	19	7.6	19	76	16	128	45	23	19	11	1.82
52662--52790	19	7.3	19	75	17	125	8	17	28	45	1.77
52662--52753	33	2.8	33	93	3	150	7	18	28	45	1.76
52834--53305	93	5.1	93	98	1	921	46	19	12	22	1.83
55009--55098	14	5.7	14	74	23	81	41	24	25	8	1.84
55001--55115	33	3.5	33	95	0	203	44	21	24	9	1.82
55008--55120	19	6.8	18	72	23	88	42	23	24	9	1.84
55132--55188	14	3.7	14	75	20	60	8	24	22	43	1.81
55116--55196	33	2.5	33	93	0	135	8	22	23	45	1.79
55173--55248	21	3.7	21	85	3	109	11	25	18	44	1.83
55172--55249	41	1.9	41	94	0	138	12	25	17	43	1.85
55328--55398	33	2.2	33	89	0	106	47	16	23	11	1.79
55580--55634	22	2.5	22	81	0	74	20	16	40	23	1.91
55757--55838	40	2.1	40	81	6	96	23	15	23	37	1.93
55780--55972	20	9.6	20	82	3	210	19	19	25	35	1.95
55959--56041	21	4.0	21	73	6	78	25	16	24	33	1.96
55939--56037	42	2.4	43	77	11	100	21	18	23	37	1.94
56255--56364	41	2.7	40	90	4	175	18	20	25	36	1.94
56280--56352	20	3.6	20	75	3	83	10	21	27	39	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56259--56364	20	5.2	21	68	7	67	17	19	26	35	1.95
56401--56598	21	9.6	21	74	5	188	20	18	26	34	1.95
56392--56605	41	5.2	41	86	3	286	20	18	25	36	1.94
56226--56507	142	2.0	143	92	2	469	20	21	23	34	1.96
56422--56535	20	5.6	20	71	4	102	16	19	24	39	1.92
56572--56638	34	2.0	34	85	2	91	20	17	23	37	1.94
56590--56679	41	2.4	35	82	15	110	17	20	22	40	1.92
56623--56688	19	3.3	19	72	12	69	18	19	21	40	1.91
56605--56696	41	2.2	41	94	0	166	19	16	22	41	1.90
56605--56673	22	3.3	22	74	12	81	18	17	24	39	1.92
56773--56799	6	4.5	6	100	0	54	33	51	14	0	1.43
57304--57341	6	6.7	6	96	3	62	0	18	52	28	1.45
57422--57487	19	3.3	19	72	12	69	40	21	19	18	1.91
57437--57508	22	3.4	22	73	11	87	37	25	19	18	1.94
57431--57720	41	7.1	40	91	3	345	37	24	21	16	1.94
57431--57720	82	3.5	81	90	4	397	37	24	21	16	1.94
57478--57634	21	7.6	21	68	13	92	36	26	22	14	1.93
57456--57720	123	2.2	124	92	4	439	36	24	21	16	1.94
57520--57717	21	9.6	21	71	7	129	35	25	21	17	1.95
57497--57720	41	5.5	41	93	3	371	36	25	21	16	1.94
63914--63944	15	2.1	15	93	0	53	9	67	16	6	1.39
69293--69341	23	2.2	22	88	3	71	22	22	34	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69272--69351	23	3.7	22	73	12	67	23	22	30	23	1.99
70931--70973	19	2.3	19	100	0	86	30	27	20	20	1.98
73187--73408	117	1.9	118	80	6	263	27	14	9	48	1.74
77840--78185	55	6.2	55	88	1	494	26	17	18	36	1.94
77840--78185	111	3.1	111	89	0	523	26	17	18	36	1.94
81647--81775	35	3.6	35	87	2	168	33	3	34	27	1.75
81647--81793	35	4.1	36	81	8	115	34	4	31	28	1.78
82115--82158	19	2.2	20	80	4	54	45	6	9	38	1.63
85389--85425	12	3.2	11	88	11	56	0	13	0	86	0.57
85388--85423	18	2.0	18	89	10	56	0	16	0	83	0.65
85395--85425	14	2.1	15	94	5	55	0	12	0	87	0.55
85682--85714	6	5.7	6	89	3	50	57	0	30	12	1.35
85870--85998	35	3.7	35	79	8	129	31	2	37	29	1.70
85885--86021	35	3.8	36	86	3	177	32	2	37	27	1.72
85927--85984	13	4.7	13	68	12	50	29	1	39	29	1.67
86362--86404	19	2.2	20	87	4	61	48	6	9	34	1.62
90758--91018	105	2.4	107	83	8	291	28	15	17	38	1.90
90738--91021	55	5.3	55	82	5	330	28	16	17	36	1.92

Tables:   1

The End!