Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006366.1 Hibiscus syriacus cultivar Beakdansim tig00015291_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52895

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1287--1338
26
2.0
26
92
0
86
19
23
30
26
1.98
1542--1590
25
2.0
25
95
0
89
51
0
2
46
1.12
4445--4492
24
2.0
24
87
0
69
50
2
0
47
1.12
4472--4518
21
2.2
21
84
0
58
55
2
0
42
1.12
4533--4589
21
2.8
20
78
5
60
43
0
0
56
0.99
4670--4735
19
3.5
20
80
15
79
56
1
0
42
1.08
4681--4731
20
2.6
20
87
9
70
54
1
0
43
1.11
4681--4735
19
2.8
21
86
10
80
54
1
0
43
1.10
4721--4777
26
2.2
25
78
9
62
64
1
3
29
1.20
4915--4949
17
2.1
17
89
5
54
68
0
0
31
0.90
5237--5301
9
7.1
9
78
14
62
40
0
0
60
0.97
5247--5298
19
2.7
20
80
14
65
40
0
0
59
0.97
5246--5301
20
2.8
20
79
15
64
41
0
0
58
0.98
5349--5407
3
19.7
3
92
0
100
62
3
0
33
1.12
7473--7538
29
2.3
29
84
5
80
34
0
15
50
1.44
7485--7605
29
4.2
29
81
0
116
38
1
10
48
1.48
7483--7609
58
2.2
58
78
0
146
37
1
11
49
1.48
7628--7688
30
2.1
29
81
6
70
40
3
6
49
1.45
12074--14055
617
3.2
617
97
0
3687
40
17
17
24
1.90
15197--15224
14
2.0
14
100
0
56
28
14
0
57
1.38
20965--20998
3
11.3
3
100
0
68
64
0
35
0
0.94
22002--22041
20
2.0
20
85
0
53
45
15
7
32
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23558--23590
2
16.5
2
100
0
66
51
0
0
48
1.00
26375--26399
13
1.9
13
100
0
50
28
0
0
72
0.86
32406--32431
13
2.0
13
100
0
52
61
0
0
38
0.96
35294--35342
10
4.5
10
79
18
53
8
12
26
53
1.66
35280--35335
14
4.3
14
80
17
66
8
12
26
51
1.69
35281--35342
24
2.6
24
92
0
97
9
11
25
53
1.67
35281--35355
24
3.1
24
88
0
78
12
10
22
54
1.67
36521--36553
16
2.1
16
94
0
57
9
12
21
57
1.62
40236--40356
60
2.0
60
100
0
242
23
16
14
44
1.85
46035--46528
38
13.0
36
73
15
159
44
2
8
44
1.46
46171--46206
2
18.5
2
94
5
65
50
0
0
50
1.00
46051--46528
76
6.3
73
73
18
290
44
2
7
44
1.46
46232--46528
38
7.9
38
85
10
344
44
2
7
45
1.45
47058--47128
27
2.6
27
82
8
74
63
8
7
21
1.46
48682--48718
16
2.3
16
100
0
74
5
16
45
32
1.70
48828--48897
6
11.7
6
95
0
104
50
0
0
50
1.00
51007--51032
9
2.9
9
100
0
52
46
23
7
23
1.78
51144--51182
17
2.4
17
95
4
71
43
0
5
51
1.24

Tables:   1

The End!