genome.fa.s6374.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006374.1 Hibiscus syriacus cultivar Beakdansim tig00015335_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  750659

Tables:   1   2   

This is table  1  of  2  ( 213 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11644--11690	25	1.9	24	86	4	67	4	12	8	74	1.19
22717--22771	26	2.2	26	83	9	69	54	0	1	43	1.10
37447--37592	3	48.3	3	95	4	267	32	0	67	0	0.91
38286--38342	24	2.4	24	90	0	87	40	17	15	26	1.90
38677--38730	27	2.0	27	85	0	72	38	5	0	55	1.23
46068--46106	20	1.9	21	94	5	71	20	17	20	41	1.91
47218--47259	18	2.3	18	91	0	66	28	0	28	42	1.56
50699--50741	2	21.5	2	100	0	86	48	0	0	51	1.00
60305--60388	30	2.8	29	79	12	82	40	7	19	33	1.78
61563--61608	24	1.9	24	95	0	83	30	15	15	39	1.88
63814--63860	20	2.3	20	100	0	94	46	4	14	34	1.64
72936--73003	24	2.8	24	88	0	109	26	11	11	50	1.73
74657--74733	25	3.0	25	72	9	66	57	3	37	1	1.26
76368--76414	2	23.5	2	100	0	94	51	0	0	48	1.00
76432--76651	85	2.6	85	87	1	307	31	16	18	33	1.93
86689--86721	16	2.0	17	88	5	50	39	3	6	51	1.42
109042--109313	20	13.4	20	71	11	124	37	23	18	20	1.94
109103--109313	41	5.2	41	87	1	282	37	23	18	21	1.94
109874--109952	20	3.9	21	86	5	94	51	17	18	11	1.75
109874--109995	20	6.5	19	74	13	83	49	20	18	11	1.78
109991--110055	19	3.7	19	72	19	68	12	21	21	44	1.85
109996--110088	33	2.8	33	90	1	141	12	22	21	43	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110053--110108	20	2.8	20	78	10	69	19	25	16	39	1.91
110970--111007	19	1.9	21	84	10	53	44	7	0	47	1.32
111305--111348	22	2.0	22	100	0	88	22	18	36	22	1.95
111833--112213	94	4.1	94	94	1	622	21	12	17	47	1.81
112322--112373	14	3.4	14	72	23	50	44	21	25	9	1.82
112331--112390	19	3.4	19	70	25	60	48	20	20	11	1.80
112301--112388	33	2.7	33	84	10	119	46	20	20	12	1.82
112465--112547	20	4.2	20	92	0	130	22	19	20	37	1.94
113056--113138	42	2.0	42	81	9	98	24	36	19	20	1.95
114489--114524	14	2.6	14	90	0	54	30	0	22	47	1.52
114626--114721	33	2.8	33	90	3	138	41	20	23	13	1.88
114659--114726	19	3.8	19	72	21	74	45	19	22	13	1.84
114736--114831	33	2.9	34	88	3	140	14	22	19	42	1.88
114803--114896	20	4.7	20	86	2	127	20	21	23	35	1.96
117306--117359	24	2.2	24	93	0	90	40	20	18	20	1.91
117306--117373	24	2.8	24	84	0	64	38	20	17	23	1.93
118219--118270	20	2.6	20	87	6	79	19	19	23	38	1.93
118359--118435	20	3.8	20	78	10	84	18	16	27	37	1.92
118361--118450	41	2.2	40	88	2	126	18	16	24	40	1.91
118390--118450	20	3.1	19	79	9	68	18	16	22	42	1.89
118462--118511	20	2.5	20	90	6	75	14	18	24	44	1.86
118561--118614	20	2.7	19	75	8	63	16	18	31	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
118844--118886	19	2.3	19	87	0	59	44	4	6	44	1.52
119666--119766	43	2.4	42	85	11	134	31	19	14	33	1.93
120513--120559	6	7.5	6	81	13	51	2	19	0	78	0.85
120510--120547	18	2.1	19	90	5	60	5	15	0	78	0.91
120530--120556	7	3.9	7	100	0	54	0	25	0	74	0.83
121224--121256	9	3.8	9	84	8	50	0	12	0	87	0.53
121224--121256	17	1.9	17	100	0	66	0	12	0	87	0.53
140221--140876	81	8.1	80	87	2	857	34	10	24	30	1.90
140225--140860	323	2.0	323	86	2	893	34	11	24	30	1.90
140920--141037	45	2.6	45	93	0	191	45	7	23	22	1.78
140966--141166	90	2.2	90	84	4	262	39	10	23	25	1.88
140966--141164	45	4.4	44	83	3	220	39	11	24	25	1.88
144565--144616	20	2.6	20	81	0	59	36	15	25	23	1.93
146332--146858	79	6.7	79	89	2	772	37	11	22	28	1.89
146557--146903	45	8.5	44	67	20	189	37	11	22	28	1.89
146332--146858	236	2.2	236	90	2	799	37	11	22	28	1.89
151529--151584	22	2.7	20	81	10	67	30	17	26	25	1.97
152131--152240	45	2.5	44	95	0	166	30	11	26	30	1.92
152176--152570	79	5.0	79	89	1	569	37	11	21	28	1.89
152066--152319	124	2.0	124	92	1	420	35	11	24	29	1.90
152300--152421	34	3.3	34	70	22	109	40	12	20	27	1.88
152334--152491	45	3.8	44	70	17	138	40	12	19	27	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
152066--152477	203	2.0	199	83	7	517	37	11	22	28	1.89
154029--154659	81	7.8	81	87	0	832	34	10	23	31	1.88
154728--154935	45	4.6	44	84	4	238	41	9	23	25	1.84
154872--154946	24	3.2	24	66	11	75	30	13	29	26	1.94
154863--154972	45	2.4	45	96	0	202	34	13	27	24	1.93
176079--176233	4	38.8	4	100	0	310	50	24	0	25	1.50
184032--184127	31	3.1	31	83	8	122	29	28	26	16	1.97
187666--187697	16	2.0	16	93	0	55	46	3	18	31	1.65
189794--189847	5	10.8	5	80	11	58	0	22	0	77	0.76
189796--189836	8	4.9	8	93	6	64	0	21	0	78	0.76
189796--189847	16	2.9	17	86	13	70	0	23	0	76	0.78
191267--191298	16	2.0	16	100	0	64	43	6	18	31	1.75
200010--200038	14	2.1	14	100	0	58	65	0	0	34	0.93
201882--201923	21	2.0	20	86	4	57	52	0	7	40	1.29
204651--204738	6	13.5	6	73	19	52	1	22	1	75	0.94
204651--204712	26	2.4	24	82	15	79	0	27	0	72	0.85
204637--204739	5	20.8	5	77	7	70	0	21	2	74	1.00
204703--204738	14	2.7	13	91	4	54	2	11	2	83	0.86
224297--224343	25	1.9	24	86	4	67	4	12	8	74	1.19
235387--235441	26	2.2	26	83	9	69	54	0	1	43	1.10
252147--252932	54	14.6	54	85	0	991	33	18	19	28	1.96
258892--258962	35	2.0	35	100	0	142	30	16	14	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
265413--265495	35	2.4	35	85	2	105	43	12	8	36	1.72
265438--265503	35	1.9	34	87	3	96	43	10	9	36	1.71
272406--272462	17	3.4	17	75	18	64	43	7	7	42	1.58
281828--281925	49	2.0	49	100	0	196	38	16	8	36	1.78
282303--282344	21	2.0	22	85	4	59	23	23	28	23	2.00
282713--282932	45	4.9	45	92	1	363	30	22	5	41	1.77
282713--282932	89	2.5	90	91	2	363	30	22	5	41	1.77
283037--283194	40	4.0	40	91	0	262	32	27	16	22	1.96
303872--303910	11	3.5	11	89	0	51	61	0	33	5	1.18
331013--331113	17	5.9	17	74	4	69	42	8	12	35	1.75
331040--331083	18	2.5	18	85	10	56	43	11	9	36	1.72
335940--335998	23	2.5	24	91	5	102	49	3	22	25	1.65
348200--348240	21	2.1	19	86	9	55	29	19	19	31	1.96
355775--355813	17	2.3	17	95	0	69	30	20	10	38	1.86
359448--359508	17	3.5	17	80	6	61	37	14	8	39	1.76
370641--370720	40	2.0	40	82	4	99	23	26	22	27	2.00
385315--385356	18	2.4	17	77	14	50	40	11	11	35	1.79
390346--390414	17	4.0	17	77	3	57	40	10	11	37	1.75
390370--390413	18	2.5	18	85	10	56	43	11	9	36	1.72
395440--395481	18	2.4	17	77	14	50	40	11	11	35	1.79
397874--397910	14	2.9	13	84	15	51	5	10	0	83	0.79
399366--399418	17	3.1	17	83	5	63	43	5	15	35	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
407423--407462	17	2.4	17	86	0	53	35	15	7	42	1.75
409013--409041	14	2.0	15	93	6	51	10	0	27	62	1.28
413456--413504	17	2.9	17	84	0	62	40	14	6	38	1.71
414463--414507	16	2.8	16	89	3	72	20	31	0	48	1.49
417887--417973	24	3.7	23	84	4	120	37	19	16	26	1.92
419109--419144	18	2.0	18	88	0	54	30	16	0	52	1.44
420429--420510	8	10.6	8	72	24	61	20	24	40	14	1.90
420429--420462	15	2.1	16	89	10	52	23	29	35	11	1.90
420452--420527	13	5.5	13	76	14	80	18	21	44	15	1.86
420475--420549	18	4.4	18	75	16	70	16	17	48	18	1.82

Tables:   1   2