genome.fa.s6374.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006374.1 Hibiscus syriacus cultivar Beakdansim tig00015335_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  750659

Tables:   1   2   

This is table  2  of  2  ( 213 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
420462--420544	31	2.7	31	92	0	139	16	18	46	18	1.84
422581--422653	35	2.1	35	86	0	101	32	28	26	12	1.92
422735--422821	24	3.7	23	84	4	120	37	19	16	26	1.92
423957--423992	18	2.0	18	88	0	54	30	16	0	52	1.44
425278--425359	8	10.6	8	72	24	61	20	24	40	14	1.90
425278--425311	15	2.1	16	89	10	52	23	29	35	11	1.90
425301--425376	13	5.5	13	76	14	80	18	21	44	15	1.86
425324--425398	18	4.4	18	75	16	70	16	17	48	18	1.82
425311--425393	31	2.7	31	92	0	139	16	18	46	18	1.84
427430--427502	35	2.1	35	86	0	101	32	28	26	12	1.92
427584--427670	24	3.7	23	84	4	120	37	19	16	26	1.92
428806--428841	18	2.0	18	88	0	54	30	16	0	52	1.44
430128--430177	8	6.5	8	78	21	54	20	28	38	14	1.91
430128--430161	15	2.1	16	89	10	52	23	29	35	11	1.90
430151--430208	13	4.5	13	91	0	89	18	20	44	15	1.86
432248--432321	36	2.1	36	84	2	96	32	29	25	12	1.92
432403--432489	24	3.7	23	84	4	120	37	19	16	26	1.92
433627--433662	18	2.0	18	88	0	54	30	16	0	52	1.44
434965--435027	18	3.8	18	74	20	64	15	22	46	15	1.84
434965--435062	31	3.2	31	91	0	151	16	18	46	18	1.84
434978--435014	13	2.8	13	91	0	65	13	21	48	16	1.80
446560--446596	18	2.1	18	89	0	56	45	16	8	29	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
452953--453008	19	2.8	20	86	5	87	42	7	8	41	1.63
456213--456268	24	2.3	24	84	6	69	10	16	14	58	1.62
460603--460648	24	1.9	24	95	0	83	47	6	23	21	1.74
460788--460833	24	1.9	24	95	0	83	36	10	23	28	1.89
465996--466035	13	3.0	13	81	3	53	32	10	27	30	1.89
474133--474180	25	2.0	24	84	12	62	54	6	0	39	1.26
490959--490997	18	2.2	18	95	0	69	35	7	10	46	1.67
499215--499257	21	2.0	21	86	0	59	37	16	16	30	1.91
513644--513766	54	2.3	53	80	9	142	25	18	21	34	1.96
516450--516488	21	1.9	20	84	5	51	35	10	5	48	1.59
517295--517422	13	10.6	12	69	15	61	39	3	3	53	1.38
519111--519158	21	2.3	21	100	0	96	35	12	33	18	1.89
529244--529376	66	2.0	66	95	0	239	30	9	20	39	1.85
532242--532282	20	2.0	20	90	0	64	17	0	21	60	1.35
534431--534588	72	2.2	73	86	1	210	42	25	11	20	1.86
536292--536345	18	3.1	17	76	10	56	35	1	11	51	1.48
536686--536753	32	2.1	33	91	2	111	57	7	22	13	1.60
537464--537512	20	2.5	19	83	6	53	22	8	0	69	1.14
537556--537596	17	2.3	18	84	12	50	24	7	2	65	1.30
542502--542526	10	2.5	10	100	0	50	40	20	12	28	1.87
561498--561539	22	1.9	22	100	0	84	30	14	28	26	1.95
561495--561549	22	2.7	20	86	10	83	29	14	29	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
561992--562298	45	6.9	45	85	3	368	40	10	20	29	1.85
561955--562298	135	2.6	134	83	3	408	38	10	21	29	1.87
561992--562337	45	7.7	45	83	3	241	40	9	19	30	1.83
561994--562298	133	2.3	134	85	3	346	40	10	20	29	1.85
567471--567603	49	2.8	47	80	4	185	32	11	13	42	1.80
570187--570237	18	2.7	18	90	9	75	15	23	45	15	1.85
570193--570224	13	2.5	13	100	0	64	12	25	46	15	1.81
581889--581921	16	2.1	16	88	5	50	48	0	15	36	1.45
582409--582615	111	1.9	111	84	2	281	31	14	19	34	1.92
594980--595008	9	3.3	9	90	9	51	55	27	6	10	1.59
600372--600416	20	2.2	20	92	0	72	24	28	8	37	1.86
607984--608466	267	1.8	267	85	0	687	32	17	17	32	1.94
611596--611669	37	2.0	37	100	0	148	32	13	18	35	1.90
613210--613288	32	2.5	32	80	0	95	36	7	5	50	1.53
613095--613417	98	3.4	97	70	16	237	35	5	9	49	1.59
613315--613385	33	2.2	33	82	10	83	30	4	11	53	1.55
613423--613461	13	2.9	13	96	3	69	41	7	7	43	1.62
617582--618087	179	2.8	177	76	10	474	37	11	10	40	1.75
618909--618940	14	2.3	14	100	0	64	31	6	18	43	1.75
628645--628727	40	2.1	40	86	4	114	19	9	26	44	1.81
640550--640854	153	2.0	154	98	1	587	33	14	18	33	1.91
641705--641764	14	4.3	14	93	0	102	45	26	5	23	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
642507--642559	17	3.1	17	80	0	61	41	7	13	37	1.72
651630--651654	9	2.8	9	100	0	50	56	0	12	32	1.36
669230--669275	20	2.3	19	85	14	58	50	8	15	26	1.73
679562--679607	20	2.3	19	85	14	58	50	8	15	26	1.73
681656--681724	6	10.8	6	77	11	59	79	0	15	4	0.88
681656--681705	13	3.6	14	84	12	68	82	0	16	2	0.77
681656--681724	17	4.7	15	77	22	60	79	0	15	4	0.88
681661--681724	34	1.9	33	87	9	94	79	0	15	4	0.89
681656--681706	7	7.4	7	85	10	61	82	0	15	1	0.76
682407--682445	16	2.2	17	86	13	53	79	5	15	0	0.90
682399--682445	9	5.2	9	78	16	53	78	4	17	0	0.90
700526--700579	3	18.3	3	79	11	58	61	1	1	35	1.18
700775--701145	53	6.9	53	82	6	349	21	26	18	33	1.96
701108--701419	55	5.7	55	88	1	432	29	25	14	30	1.94
701414--701569	54	2.9	54	90	1	233	26	22	17	33	1.96
701922--702002	37	2.2	38	84	6	112	24	19	17	38	1.93
701933--702101	37	4.6	37	78	7	164	24	15	21	37	1.92
707581--707723	55	2.6	55	82	0	178	23	21	11	42	1.86
710105--710145	2	20.5	2	94	0	73	51	2	0	46	1.14
713674--713703	4	7.5	4	92	0	51	26	3	23	46	1.68
717940--717973	16	2.1	16	88	0	50	29	11	17	41	1.85
727825--727950	59	2.2	58	92	1	207	28	17	23	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
730885--730927	16	2.5	19	75	24	51	23	18	6	51	1.70
731787--731827	20	2.1	19	86	4	55	36	9	4	48	1.58
734768--734810	20	2.2	20	91	4	70	39	11	2	46	1.53
735556--735595	13	3.2	12	82	10	53	80	2	17	0	0.83
735556--735595	6	6.3	6	85	8	53	80	2	17	0	0.83

Tables:   1   2

The End!