genome.fa.s6379.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006379.1 Hibiscus syriacus cultivar Beakdansim tig00015350_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75404

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3124--3161	18	2.2	17	86	13	51	15	2	5	76	1.08
7716--7752	18	2.1	18	100	0	74	16	10	24	48	1.77
7719--7759	18	2.3	18	91	0	64	19	14	19	46	1.84
12025--12083	31	2.0	30	83	6	75	37	20	6	35	1.79
14821--14886	31	2.1	31	94	0	114	33	13	30	22	1.93
19887--19944	30	2.0	29	86	3	80	37	1	15	44	1.57
24370--24442	36	2.0	36	89	0	110	30	13	19	36	1.90
24767--24799	14	2.3	15	89	5	50	45	3	0	51	1.16
31232--31283	21	2.5	20	78	3	59	38	19	25	17	1.93
31272--31406	20	6.7	20	80	7	121	33	24	17	24	1.96
31269--31406	61	2.3	61	85	0	195	34	23	17	23	1.96
31574--31617	22	2.0	22	95	0	79	20	45	15	18	1.85
31878--31936	20	3.0	20	87	0	73	16	18	22	42	1.89
32073--32127	25	2.2	26	81	15	71	20	9	16	54	1.68
33255--33302	18	2.7	18	83	0	69	25	41	14	18	1.88
33781--33847	20	3.4	20	81	2	73	38	23	22	14	1.92
33836--33891	14	3.7	14	80	17	67	51	21	16	10	1.74
33820--33910	32	2.8	33	94	3	166	48	19	18	13	1.81
33927--33984	14	3.9	14	79	16	71	10	17	24	48	1.78
33922--34000	32	2.4	33	95	2	142	11	18	22	46	1.81
33985--34040	20	2.8	19	84	7	67	16	23	23	37	1.93
34075--34139	25	2.5	26	75	12	71	24	10	16	47	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35909--35944	14	2.6	14	90	0	54	30	0	22	47	1.52
36027--36065	20	2.0	20	89	0	60	46	33	7	12	1.71
36058--36111	14	3.5	14	75	22	54	46	20	22	11	1.82
36071--36116	14	2.8	17	75	25	53	45	19	21	13	1.84
36142--36211	20	3.5	20	98	1	133	15	24	27	32	1.95
37199--37252	24	2.2	24	90	0	81	22	16	20	40	1.91
37427--37451	12	2.1	12	100	0	50	72	0	28	0	0.86
39747--39840	33	2.9	32	83	9	109	43	19	20	17	1.88
39855--39911	14	3.7	14	75	20	60	8	24	22	43	1.81
39849--39929	33	2.5	33	97	0	153	11	23	20	44	1.84
39869--39929	19	3.5	19	72	21	69	11	22	21	44	1.84
40036--40072	14	2.6	14	91	0	65	45	24	0	29	1.53
41429--41634	42	4.9	41	73	9	164	22	17	36	22	1.94
41429--41495	21	3.2	21	68	4	55	19	20	35	23	1.95
41459--41634	84	2.1	84	97	0	334	23	16	38	22	1.93
41851--42037	91	2.0	93	90	6	301	47	19	11	21	1.80
43726--43783	20	3.0	20	84	2	73	44	18	22	13	1.85
43749--43844	33	2.9	33	93	0	165	44	21	22	10	1.83
43724--43849	19	7.1	19	71	18	101	45	19	23	11	1.83
43845--43889	19	2.4	19	80	0	54	8	15	24	51	1.72
44395--44447	20	2.7	20	93	0	88	26	20	28	24	1.99
44456--44509	20	2.7	20	97	0	99	25	18	24	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44396--44512	61	1.9	61	85	0	162	23	17	24	33	1.97
44396--44530	61	2.2	61	81	2	155	22	20	24	32	1.98
44580--44620	21	2.0	21	85	0	55	34	31	17	17	1.93
45516--45571	12	4.9	11	74	22	53	60	19	5	14	1.53
45502--45571	34	2.1	34	97	0	131	60	20	4	15	1.52
45517--45571	17	3.2	17	66	19	51	60	20	5	14	1.54
46285--46356	31	2.3	31	76	4	74	62	4	6	26	1.39
52712--52745	2	17.0	2	100	0	68	50	0	0	50	1.00
53858--53952	21	4.6	21	82	2	129	22	16	27	33	1.95
53858--53975	62	1.9	62	96	0	218	20	16	26	36	1.94
53964--54056	22	4.4	22	79	6	95	21	17	23	37	1.94
53917--54020	41	2.6	41	81	7	124	23	17	22	37	1.94
54155--54207	6	9.2	6	91	8	92	33	49	16	0	1.47
54695--54724	5	5.8	5	96	4	51	0	20	43	36	1.52
54695--54760	6	12.0	6	84	7	63	1	18	42	37	1.59
54704--54760	16	3.4	18	79	13	68	1	17	42	38	1.60
54717--54771	18	3.2	17	78	14	60	3	20	38	38	1.70
54864--54982	20	5.9	20	73	14	102	39	25	22	12	1.89
54914--55003	39	2.2	41	92	3	148	36	27	21	14	1.92
54865--54982	59	2.0	62	88	5	179	39	25	22	11	1.88
54932--55024	21	4.6	21	80	5	102	33	26	18	21	1.96
55672--55725	24	2.2	25	86	10	83	24	12	3	59	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57613--57793	93	1.9	94	94	1	319	37	20	17	24	1.94
58276--58387	52	2.2	52	91	0	188	25	13	25	36	1.92
60392--60420	2	14.5	2	100	0	58	48	0	0	51	1.00
67758--67795	17	2.2	17	86	9	51	31	5	0	63	1.17
69344--69381	16	2.4	16	86	8	51	42	0	0	57	0.98
69357--69396	16	2.3	18	87	8	57	45	0	0	55	0.99
69796--69836	15	2.8	15	88	3	57	43	0	2	53	1.13
69980--70019	13	2.9	14	81	7	55	42	0	0	57	0.98
69917--70022	48	2.2	46	78	17	108	46	0	0	52	1.06
70093--70167	23	3.2	23	77	7	62	45	1	2	50	1.24
70295--70341	22	2.1	23	88	4	69	53	2	2	42	1.25
74761--74787	13	2.1	13	100	0	54	51	22	0	25	1.48

Tables:   1

The End!