genome.fa.s6385.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006385.1 Hibiscus syriacus cultivar Beakdansim tig00015374_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  216924

Tables:   1   2   

This is table  1  of  2  ( 130 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6402--6429	7	4.0	7	100	0	56	57	14	28	0	1.38
14599--14865	54	4.8	54	76	8	218	26	25	21	26	1.99
14599--14865	109	2.4	109	80	7	288	26	25	21	26	1.99
14735--14915	54	3.3	54	78	6	161	27	27	18	27	1.98
16276--16380	14	6.5	15	71	22	70	41	0	5	52	1.25
16342--16399	18	3.4	18	70	18	61	34	0	12	53	1.38
16328--16809	32	15.4	32	71	22	296	36	0	11	52	1.37
16441--16483	22	2.0	22	90	0	68	39	0	11	48	1.40
16351--17257	112	8.3	110	77	12	798	35	0	12	52	1.39
16351--17257	54	16.6	54	72	14	630	35	0	12	52	1.39
16480--16674	42	5.0	41	67	25	152	37	0	11	50	1.39
16649--16691	22	2.0	22	85	0	59	41	0	9	48	1.35
16671--17242	80	6.9	80	80	13	502	34	0	12	53	1.39
16836--17145	32	9.7	32	75	16	218	33	0	13	53	1.40
16985--17085	22	5.0	21	69	20	81	36	0	10	52	1.37
17084--17141	18	3.4	18	70	18	61	29	0	13	56	1.38
17125--17193	22	3.0	22	74	15	75	33	0	14	52	1.42
16523--17225	144	5.0	141	74	19	443	34	0	12	52	1.39
17205--17247	22	2.0	22	90	0	68	39	0	9	51	1.34
17271--17330	31	1.9	31	93	0	102	48	8	3	40	1.50
24104--24135	3	10.7	3	100	0	64	34	0	0	65	0.93
25990--26046	29	2.0	29	82	6	71	42	7	8	42	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26874--26930	29	2.0	28	82	3	69	33	8	14	43	1.76
37621--37665	19	2.2	21	84	7	58	64	2	0	33	1.06
38005--38062	30	1.9	30	82	0	71	39	8	13	37	1.76
39847--39903	25	2.2	25	84	9	71	68	3	15	12	1.34
40256--40301	2	23.0	2	100	0	92	50	0	0	50	1.00
40315--40385	22	3.3	22	70	16	60	64	0	14	21	1.28
40835--40942	37	2.9	37	92	0	180	33	11	12	42	1.79
41596--42534	84	11.3	84	82	5	1122	24	19	25	30	1.98
41596--42534	165	5.7	165	83	4	1165	24	19	25	30	1.98
41596--42534	250	3.8	248	88	3	1266	24	19	25	30	1.98
43749--43944	95	2.1	94	82	5	243	31	16	16	35	1.92
47574--47637	18	3.2	18	69	23	56	64	3	17	15	1.42
47555--47637	42	2.0	40	95	4	148	63	2	18	15	1.41
47562--47624	19	3.1	19	68	24	56	61	1	20	15	1.41
47742--47783	3	14.3	3	85	5	59	64	2	0	33	1.07
48492--48603	37	3.0	37	88	5	172	32	10	12	44	1.77
48974--49086	60	1.9	60	85	3	156	34	9	16	38	1.82
48975--49099	60	2.1	60	82	5	146	34	12	15	38	1.84
58301--58330	2	15.0	2	100	0	60	50	0	50	0	1.00
59357--59381	2	12.5	2	100	0	50	48	0	0	52	1.00
59758--59917	79	2.0	79	85	2	214	32	13	10	43	1.78
66051--66093	23	1.9	22	85	4	59	46	2	6	44	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67233--67318	35	2.5	35	83	7	106	32	8	11	47	1.69
68658--68748	37	2.5	36	85	3	119	31	16	2	49	1.58
75011--75097	35	2.5	34	78	12	88	55	10	6	27	1.59
75840--75909	20	3.5	20	75	11	79	28	30	18	22	1.98
76954--76978	13	1.9	13	100	0	50	76	0	24	0	0.80
77903--77970	21	3.3	21	74	12	77	19	16	26	38	1.92
77903--77991	41	2.2	41	84	8	110	22	15	24	37	1.93
77996--78032	19	1.9	19	88	0	56	21	13	29	35	1.92
83631--83712	41	2.0	41	100	0	164	36	7	29	26	1.83
83735--83767	15	2.3	15	89	5	50	48	0	12	39	1.40
85497--85560	30	2.1	30	97	0	119	62	1	0	35	1.05
86332--86444	48	2.4	48	95	0	199	47	7	6	38	1.58
95204--95235	15	2.1	16	94	5	57	6	25	18	50	1.70
95984--96017	16	2.1	16	94	0	59	32	26	8	32	1.87
99472--99514	21	2.0	21	100	0	86	39	0	13	46	1.44
99483--99568	35	2.5	35	84	0	100	37	1	20	40	1.61
99699--99756	29	2.0	29	86	6	82	27	8	29	34	1.87
100156--100218	27	2.3	27	100	0	126	26	9	23	39	1.86
105209--105259	12	4.2	12	73	12	50	64	0	1	33	1.05
105226--105299	24	3.1	23	76	18	55	58	0	5	36	1.21
106625--106676	21	2.5	21	84	3	61	30	3	32	32	1.76
113577--113629	2	26.5	2	100	0	106	50	0	0	49	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
113915--113942	2	14.0	2	100	0	56	50	0	0	50	1.00
114557--114590	2	17.0	2	100	0	68	50	0	0	50	1.00
114737--114765	2	14.5	2	100	0	58	48	0	0	51	1.00
114827--115264	218	2.0	218	99	0	867	45	7	9	37	1.64
125172--125219	24	2.1	23	92	7	80	54	10	18	16	1.70
127006--127030	11	2.3	11	100	0	50	8	60	0	32	1.26
128539--128606	28	2.4	28	85	4	84	29	8	22	39	1.84
129012--129038	11	2.5	11	100	0	54	40	0	0	59	0.98
129010--129050	14	3.2	13	77	22	50	46	0	0	53	1.00
134964--135131	60	2.8	57	75	12	142	32	21	6	39	1.79
137464--137562	34	2.8	34	79	10	110	41	11	14	33	1.81
137970--138000	2	15.5	2	100	0	62	48	0	0	51	1.00
138056--138093	20	1.9	20	88	0	58	26	7	2	63	1.35
140135--140183	25	2.0	25	84	8	64	22	20	8	48	1.75
141315--141362	19	2.6	18	90	6	78	77	8	10	4	1.12
141964--142040	22	3.5	22	80	7	102	42	24	9	23	1.83
142770--142906	36	3.8	36	83	4	170	26	20	14	38	1.91
142907--143967	106	10.0	106	89	1	1572	34	25	18	22	1.96
145221--145255	2	17.5	2	100	0	70	48	0	0	51	1.00
145312--145349	20	1.9	20	88	0	58	26	7	2	63	1.35
159496--159554	31	1.9	32	86	13	88	47	0	0	52	1.00
159508--159655	51	2.8	51	80	12	140	50	0	0	47	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
159507--159582	17	4.5	17	70	23	61	51	1	0	47	1.09
159658--159702	23	2.0	23	86	0	63	53	2	2	42	1.25
159743--159804	30	2.0	32	84	12	85	50	4	0	45	1.23
159671--159836	89	1.9	89	80	9	196	50	4	0	45	1.23
160034--160104	30	2.4	30	92	2	117	32	15	7	45	1.73
160050--160100	15	3.4	15	81	10	68	37	15	5	41	1.72
161786--161837	19	2.7	19	81	0	68	36	5	0	57	1.23
176672--176812	69	2.0	70	87	4	205	21	13	25	39	1.90
183215--183267	2	26.5	2	88	7	81	52	0	1	45	1.11
190110--190235	60	2.1	60	82	2	155	30	21	5	42	1.76
191505--191541	18	2.0	19	89	5	58	43	2	5	48	1.40
191506--191547	18	2.4	18	80	4	50	35	2	4	57	1.33
193557--193634	36	2.1	36	92	2	129	35	17	23	23	1.95
201259--201416	21	7.8	20	72	7	86	38	25	17	18	1.92
201383--201652	20	13.5	20	84	1	290	38	24	17	20	1.93
202335--202380	24	2.0	23	87	12	67	26	15	21	36	1.93
204881--204951	33	2.2	33	84	0	88	19	21	21	38	1.94
204913--204990	19	4.4	19	79	15	103	14	20	17	47	1.82
204894--204972	33	2.4	33	97	0	149	12	22	18	45	1.84
205049--205210	33	4.8	32	74	17	139	45	17	22	15	1.85
205049--205216	19	9.6	19	75	18	168	44	17	22	16	1.87
205049--205216	52	3.2	52	94	0	291	44	17	22	16	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
205223--205322	19	5.5	19	84	12	147	15	23	17	45	1.85
205206--205322	53	2.2	53	95	1	209	14	24	17	43	1.86
205428--205462	13	2.7	13	90	0	61	48	22	0	28	1.51
207436--207492	14	3.7	14	77	20	60	45	22	21	10	1.82
207417--207509	33	2.8	33	95	0	168	47	21	20	10	1.80
207380--207514	19	7.6	19	76	16	128	45	23	19	11	1.82
207510--207638	19	7.3	19	75	17	125	8	17	28	45	1.77
207510--207601	33	2.8	33	93	3	150	7	18	28	45	1.76
207682--207967	93	3.1	93	97	1	540	45	18	12	23	1.83
209670--209758	14	5.7	14	69	25	63	43	23	24	7	1.80

Tables:   1   2