genome.fa.s6388.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006388.1 Hibiscus syriacus cultivar Beakdansim tig00015389_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  98891

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3721--3747	2	13.5	2	100	0	54	51	0	48	0	1.00
4037--4082	2	23.0	2	100	0	92	50	0	0	50	1.00
7316--7454	59	2.3	59	83	1	170	35	19	5	39	1.74
7346--7477	59	2.2	60	79	4	151	35	23	4	36	1.75
10466--10491	9	2.9	9	100	0	52	11	0	0	88	0.52
15826--15870	21	2.1	22	87	4	65	37	2	2	57	1.23
16376--16420	20	2.2	20	100	0	90	24	4	15	55	1.59
23262--23401	20	7.0	20	70	12	99	34	24	14	27	1.94
23528--23583	22	2.6	22	97	2	105	25	39	8	26	1.85
24180--24213	12	2.8	12	90	0	50	55	29	0	14	1.40
26644--26679	18	2.0	18	100	0	72	55	27	0	16	1.42
27144--27284	61	2.2	63	82	8	162	50	17	2	30	1.57
28681--28712	15	2.1	15	94	0	55	21	28	28	21	1.99
30273--30324	23	2.3	23	90	3	79	30	26	25	17	1.97
30281--30326	23	2.0	23	95	4	85	26	28	26	19	1.99
30540--30598	30	2.0	30	93	0	100	33	23	3	38	1.72
30968--31008	21	2.0	21	85	0	55	9	29	31	29	1.89
31038--31078	20	2.0	20	85	0	55	12	34	29	24	1.91
30969--31141	67	2.6	66	84	6	197	16	25	27	30	1.97
37176--37243	22	3.0	22	97	2	127	26	27	26	19	1.99
37457--37515	30	2.0	30	93	0	100	33	23	3	38	1.72
37848--37886	17	2.4	16	87	8	53	0	20	2	76	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37960--38000	20	2.0	20	85	0	55	12	34	29	24	1.91
37890--38063	67	2.6	67	85	7	219	16	26	27	29	1.97
40313--40359	22	2.1	22	88	0	67	25	14	38	21	1.92
40491--40575	20	4.2	20	90	0	134	20	17	23	38	1.93
40491--40575	40	2.1	40	95	0	152	20	17	23	38	1.93
41580--41704	51	2.5	51	93	0	205	44	4	29	20	1.72
41820--41854	3	11.7	3	100	0	70	34	0	0	65	0.93
48696--48747	24	2.1	26	89	7	81	53	17	13	15	1.72
50391--50638	130	1.9	130	93	0	424	35	14	13	36	1.85
50405--50669	130	2.0	129	81	4	309	38	12	13	34	1.83
50965--51027	28	2.3	27	78	8	63	46	1	3	49	1.27
51107--51140	16	2.0	18	88	11	54	64	5	2	26	1.30
51263--51305	21	2.0	21	100	0	86	39	0	13	46	1.44
51274--51359	35	2.5	35	86	0	109	37	0	20	41	1.53
53203--53232	2	15.0	2	100	0	60	50	0	0	50	1.00
53403--53458	24	2.3	24	79	11	62	35	1	3	58	1.26
56260--56288	15	1.9	15	100	0	58	6	62	20	10	1.50
62755--62789	18	1.9	18	100	0	70	54	17	11	17	1.71
65740--66090	46	7.6	46	84	1	407	40	10	18	29	1.85
68076--68118	16	2.8	16	82	10	54	30	0	2	67	1.03
78659--78710	27	1.9	27	84	7	70	55	3	0	40	1.18
83370--83407	17	2.2	18	90	4	60	60	5	18	15	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84904--84985	2	41.5	2	95	2	148	48	1	0	50	1.08
87140--87199	19	3.1	19	88	4	93	13	30	36	20	1.90
87140--87199	20	3.0	20	90	2	86	13	30	36	20	1.90
88622--88669	20	2.5	19	83	12	62	29	12	4	54	1.56
89529--89598	34	2.1	32	86	5	95	22	30	15	31	1.95
91478--91538	29	2.1	30	84	3	79	34	21	4	39	1.75
91794--91843	21	2.4	21	86	0	64	44	30	6	20	1.75
98366--98424	30	2.0	29	90	3	91	54	1	1	42	1.20

Tables:   1

The End!