genome.fa.s6390.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006390.1 Hibiscus syriacus cultivar Beakdansim tig00015395_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  117079

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
726--769	16	2.6	18	82	13	58	52	6	9	31	1.59
1098--1139	13	3.1	13	86	10	57	0	11	2	85	0.68
1098--1139	9	4.6	9	80	14	50	0	11	2	85	0.68
12289--12332	24	1.9	23	86	9	63	54	0	0	45	0.99
12287--12338	22	2.3	24	83	9	74	55	0	3	40	1.18
13998--14052	3	18.7	3	85	10	69	63	0	0	36	0.95
13985--14042	24	2.4	24	91	5	91	58	0	0	41	0.98
13985--14052	21	3.1	21	85	10	75	60	0	0	39	0.97
13985--14052	24	2.9	23	78	12	75	60	0	0	39	0.97
14226--14513	111	2.6	112	94	1	497	47	13	14	25	1.80
14410--14605	92	2.1	92	96	0	356	47	13	14	24	1.80
14502--14891	112	3.5	112	95	0	701	44	14	16	24	1.85
14226--14828	315	1.9	316	95	1	1102	46	13	14	24	1.81
14762--15217	182	2.5	182	93	0	761	42	13	16	26	1.86
18209--18262	21	2.6	21	94	2	92	25	35	14	24	1.94
18668--18745	25	3.4	25	63	23	71	20	3	5	70	1.22
18674--18744	21	3.3	21	69	11	72	19	4	5	70	1.24
18668--18886	47	4.9	47	89	4	296	22	4	5	67	1.29
18671--18886	91	2.4	89	88	7	307	23	4	5	67	1.30
18780--18857	23	3.3	23	66	20	63	23	2	5	69	1.21
18668--18886	44	4.9	46	87	6	267	22	4	5	67	1.29
25952--26013	21	3.0	20	71	17	63	37	1	25	35	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32805--32878	29	2.5	30	84	4	96	43	8	16	32	1.77
40500--40538	3	13.0	3	94	0	69	30	0	2	66	1.05
41078--44211	4	786.2	4	97	1	5148	47	25	2	24	1.65
43636--43706	2	35.5	2	88	0	106	50	43	0	5	1.25
44031--44071	2	20.5	2	100	0	82	51	48	0	0	1.00
45027--45088	13	4.6	13	70	7	52	46	8	0	45	1.32
46724--48000	4	321.2	4	96	2	1640	46	28	3	20	1.66
47453--47554	2	51.0	2	100	0	204	50	50	0	0	1.00
47825--47884	2	30.5	2	96	3	113	51	48	0	0	1.00
48301--48345	19	2.4	19	92	7	74	66	4	15	13	1.39
48827--48888	13	4.6	13	70	7	52	46	8	0	45	1.32
50528--51948	4	356.2	4	96	1	1580	46	29	3	20	1.67
51249--51354	2	53.0	2	100	0	212	50	50	0	0	1.00
51408--51519	2	57.0	2	96	3	210	50	50	0	0	1.00
51768--51828	2	30.5	2	100	0	122	50	49	0	0	1.00
52764--52825	13	4.6	13	70	7	52	46	8	0	45	1.32
59176--59227	14	3.8	13	78	12	59	48	0	23	28	1.51
59175--59231	28	2.0	28	100	0	114	45	0	21	33	1.52
60639--60752	19	6.1	19	85	2	131	45	5	17	31	1.71
60650--60770	19	6.4	19	79	5	57	47	5	16	30	1.70
62366--62539	31	5.6	31	98	0	330	18	19	22	38	1.93
67141--67265	31	4.0	31	94	2	207	20	19	23	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68702--68748	20	2.5	20	86	6	62	51	2	6	40	1.39
69247--69271	12	2.1	12	100	0	50	52	0	8	40	1.31
74288--74343	24	2.3	23	75	6	58	53	1	1	42	1.21
76676--76720	21	2.1	21	84	8	56	60	6	2	31	1.35
78241--78315	15	4.6	16	69	14	64	38	0	0	61	0.96
78241--78330	33	2.8	33	93	1	146	37	0	1	61	1.04
81890--81930	21	1.9	22	90	5	66	36	17	19	26	1.94
98071--98139	23	3.0	23	76	0	75	33	24	23	18	1.97
102344--102397	28	1.9	28	88	7	83	51	5	1	40	1.36
107709--107745	14	2.6	14	95	0	65	43	37	13	5	1.67
109112--109147	5	7.8	5	93	6	51	19	0	0	80	0.71
109197--109262	18	3.3	19	75	14	62	21	6	1	71	1.16
109311--109335	9	2.8	9	100	0	50	20	0	0	80	0.72
110922--110970	21	2.3	21	82	6	55	65	8	8	18	1.44
112375--112403	14	2.0	15	93	6	51	62	0	3	34	1.12
114676--114717	20	2.1	20	100	0	84	42	4	26	26	1.75

Tables:   1

The End!