Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006395.1 Hibiscus syriacus cultivar Beakdansim tig00015407_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97835

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10197--10257
2
31.0
2
96
3
115
49
0
0
50
1.00
19971--20064
47
2.0
47
100
0
188
46
6
19
27
1.74
29535--29579
21
2.1
21
87
0
63
31
28
24
15
1.96
30445--30600
31
5.0
31
92
1
251
20
19
22
37
1.95
32021--32065
21
2.1
21
87
0
63
31
28
24
15
1.96
33604--33924
103
3.1
103
98
0
615
26
13
23
36
1.92
33940--34000
23
2.7
23
84
0
86
19
24
27
27
1.99
38762--39082
103
3.1
103
95
0
588
26
12
23
37
1.91
39101--39158
23
2.5
23
80
5
55
22
22
24
31
1.99
48365--48616
124
2.0
124
99
0
495
21
13
28
36
1.91
49263--49334
31
2.3
31
100
0
144
26
11
25
37
1.89
49360--49430
32
2.4
28
72
17
70
23
16
16
42
1.89
55847--55877
14
2.1
15
94
5
55
51
0
0
48
1.00
62229--62265
19
2.1
19
85
10
51
64
0
32
2
1.07
62626--62653
7
4.0
7
100
0
56
28
42
0
28
1.56
66024--66067
12
3.7
11
80
14
52
52
15
15
15
1.75
66017--66071
12
4.6
12
74
17
51
50
16
14
18
1.77
66028--66108
24
3.4
25
80
10
80
45
16
16
22
1.85
74476--74510
18
1.9
18
94
0
61
11
14
20
54
1.70
74568--74593
12
2.2
12
100
0
52
42
0
0
57
0.98
80229--80270
17
2.5
17
88
0
66
28
14
26
30
1.95
89364--89434
34
2.1
34
100
0
142
29
16
18
35
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91836--91868
16
2.0
17
88
5
50
63
0
6
30
1.18
94450--94500
19
2.7
19
96
0
93
25
33
19
21
1.97
94470--94629
62
2.5
64
84
11
188
26
21
18
32
1.97

Tables:   1

The End!