genome.fa.s6401.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006401.1 Hibiscus syriacus cultivar Beakdansim tig00015434_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64761

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19794--19823	9	3.3	9	95	0	51	60	0	6	33	1.23
21496--21523	3	9.3	3	100	0	56	32	0	0	67	0.91
22759--22805	16	2.9	16	77	3	58	42	21	4	31	1.72
31458--31530	23	3.2	23	88	0	101	35	5	19	39	1.75
31946--32018	23	3.2	23	92	0	119	34	5	21	38	1.77
32435--32507	23	3.2	23	84	0	101	35	5	19	39	1.75
32925--32997	23	3.2	23	90	0	110	35	5	20	38	1.76
31036--33442	979	2.5	977	94	0	4239	41	7	10	40	1.68
31036--33442	489	4.9	489	95	0	4214	41	7	10	40	1.68
32971--33828	445	1.9	444	94	0	1518	41	7	9	41	1.65
37374--37414	21	2.0	21	85	0	55	51	0	2	46	1.14
40381--40415	18	1.9	18	88	0	52	40	20	0	40	1.52
40521--40575	23	2.4	23	93	0	92	25	27	27	20	1.99
41782--41819	20	2.0	20	89	5	60	36	10	2	50	1.51
41783--41828	20	2.2	20	84	7	56	41	13	2	43	1.55
42259--42302	21	2.1	21	86	0	61	15	27	27	29	1.96
42541--42571	12	2.6	12	100	0	62	41	16	0	41	1.48
45086--45135	18	2.8	17	80	14	57	58	2	4	36	1.29
46873--46929	6	9.3	6	79	11	53	26	15	17	40	1.90
46873--46914	18	2.3	18	91	0	66	26	16	21	35	1.94
46873--46907	12	2.9	12	95	0	61	25	17	22	34	1.96
55169--55514	111	3.1	110	91	2	532	45	13	14	26	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55622--55993	179	2.1	178	89	3	579	43	12	16	28	1.84
56621--56668	23	2.1	23	84	0	60	39	16	4	39	1.68
57217--57714	249	2.0	248	99	0	978	24	18	18	38	1.93
60701--60739	10	3.8	10	93	6	69	51	0	7	41	1.31
60701--60739	21	1.9	20	94	5	69	51	0	7	41	1.31

Tables:   1

The End!