genome.fa.s6410.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006410.1 Hibiscus syriacus cultivar Beakdansim tig00015455_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  117329

Tables:   1   

This is table  1  of  1  ( 84 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7909--7960	24	2.2	24	82	6	61	50	15	9	25	1.74
7932--8023	48	1.9	48	86	4	132	42	18	15	23	1.88
7932--8023	24	3.8	24	85	2	114	42	18	15	23	1.88
12659--12710	24	2.2	24	82	0	59	50	17	11	21	1.77
12682--12773	24	3.8	24	86	2	123	40	18	17	23	1.91
12683--12791	48	2.3	48	80	6	114	42	18	15	23	1.89
15278--15318	18	2.3	18	91	0	64	12	19	48	19	1.80
15274--15334	31	2.0	31	87	6	88	18	19	44	18	1.87
21133--21171	15	2.6	15	95	0	69	53	30	5	10	1.56
22227--23174	227	4.1	228	95	2	1715	45	7	7	39	1.62
23223--23269	20	2.4	19	89	10	76	55	10	17	17	1.69
23411--23453	20	2.3	19	88	11	63	51	11	16	20	1.75
25660--25703	21	2.1	21	91	0	70	40	11	31	15	1.83
25737--25797	32	1.9	32	86	6	88	29	0	45	24	1.53
27570--27619	19	2.6	19	90	3	73	30	2	10	58	1.42
27738--30050	391	5.9	397	96	2	4122	35	15	17	31	1.91
27738--30055	196	11.8	198	95	2	4063	35	15	17	31	1.91
31515--31594	6	13.3	6	79	0	79	38	8	33	18	1.82
31530--31607	6	13.0	6	81	0	66	38	6	33	21	1.79
31518--31603	24	3.5	24	87	4	109	38	8	33	19	1.82
31518--31594	12	6.4	12	90	0	118	37	9	33	19	1.83
31787--31811	13	1.9	13	100	0	50	24	16	20	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33367--33439	23	3.2	23	88	0	101	35	4	20	39	1.72
33796--33851	23	2.7	20	81	13	60	37	5	17	39	1.73
34191--34267	23	3.5	22	85	3	93	33	3	22	40	1.72
34619--34694	22	3.5	22	87	3	100	32	3	22	40	1.72
33813--35468	427	3.9	430	96	2	2976	40	7	12	39	1.71
35047--35119	23	3.2	23	84	0	92	35	2	20	41	1.67
36096--36170	37	2.0	37	82	10	91	49	5	0	45	1.25
38864--39021	84	1.9	83	88	3	237	48	10	4	37	1.57
42862--42914	24	2.1	25	86	6	72	56	0	3	39	1.17
42862--42911	25	2.0	25	84	11	66	56	0	4	40	1.18
51032--51118	35	2.5	34	80	12	97	55	10	8	26	1.61
51674--51727	18	3.0	18	86	0	72	27	16	27	27	1.97
53359--53399	18	2.3	18	91	4	66	63	2	4	29	1.28
54327--54393	31	2.2	31	97	0	125	50	10	8	29	1.67
56458--56498	15	2.7	15	96	0	73	7	21	19	51	1.71
56865--56907	22	2.0	22	86	9	61	67	2	2	27	1.15
57990--58038	15	3.3	15	91	0	80	42	0	2	55	1.11
57933--58020	42	2.1	42	85	4	115	38	1	9	51	1.41
60230--60269	21	1.9	21	89	0	62	35	12	5	47	1.63
60237--60279	21	2.0	21	82	8	52	32	13	4	48	1.63
65625--65734	35	3.0	36	86	6	159	29	5	19	46	1.72
66894--66939	18	2.8	16	80	6	56	36	4	30	28	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67520--67607	38	2.3	38	90	5	135	37	35	10	17	1.83
67601--68056	211	2.2	210	91	3	744	38	25	11	25	1.88
68965--69003	20	2.0	20	94	0	69	38	30	17	12	1.88
68964--69003	9	4.2	9	81	12	53	37	32	17	12	1.87
69010--69089	29	2.8	29	90	3	117	15	30	32	22	1.94
69165--69220	27	2.1	27	100	0	112	28	25	21	25	1.99
69366--69411	23	2.0	23	100	0	92	47	4	39	8	1.54
69366--69426	23	2.6	23	86	5	59	50	6	36	6	1.54
69562--69693	45	3.0	45	79	14	125	40	0	11	47	1.39
69865--69895	15	2.1	15	93	0	53	35	0	6	58	1.24
72061--72128	25	3.0	21	71	24	66	47	7	4	41	1.51
72284--72323	14	2.9	14	88	3	55	47	5	2	45	1.38
72269--73123	26	34.7	25	75	15	548	44	9	2	43	1.50
72298--73181	124	7.2	124	96	1	1606	44	9	2	43	1.50
76873--76935	28	2.2	30	91	5	103	57	11	0	31	1.34
76877--76942	28	2.4	28	85	10	98	56	10	0	33	1.34
76912--76960	21	2.3	21	85	3	71	53	16	0	30	1.43
77572--77692	29	4.2	29	98	0	233	17	36	31	14	1.90
82339--82389	18	2.8	18	87	0	84	27	15	31	25	1.96
85773--86471	8	91.8	8	74	16	544	40	2	6	49	1.44
85801--86482	39	16.6	39	75	18	497	40	2	6	49	1.44
85773--86345	31	17.5	31	80	14	445	40	2	7	49	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85937--86497	109	5.0	109	79	14	494	40	2	7	49	1.44
88726--89084	172	2.1	173	89	1	560	36	18	5	39	1.73
89535--89578	23	1.9	23	100	0	88	25	40	25	9	1.84
89595--89652	22	2.7	22	83	2	82	18	34	17	29	1.94
90405--90444	17	2.5	15	88	8	53	27	0	5	67	1.11
91474--91521	21	2.3	20	79	10	51	20	4	4	70	1.21
94503--94559	30	1.9	30	85	0	78	47	7	12	33	1.68
95692--95771	30	2.8	27	77	7	70	26	10	10	53	1.65
99662--99791	63	2.1	63	91	0	206	55	20	7	16	1.65
102754--102806	20	2.7	19	91	2	79	33	30	16	18	1.94
104789--104829	21	2.0	20	86	13	57	51	2	12	34	1.52
111416--111503	45	1.9	46	88	2	133	27	22	19	30	1.98
112318--112378	21	3.0	20	81	13	72	26	14	27	31	1.95
112329--112378	18	2.5	20	87	9	68	26	18	28	28	1.98
113340--113442	38	2.6	37	74	8	98	27	28	18	26	1.98
113403--113442	20	2.0	20	85	0	53	27	30	17	25	1.97
116841--116897	2	28.5	2	89	7	89	45	3	0	50	1.18
116848--116897	25	2.0	25	96	0	91	46	2	0	52	1.12

Tables:   1

The End!