genome.fa.s6440.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006440.1 Hibiscus syriacus cultivar Beakdansim tig00015556_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  287540

Tables:   1   2   

This is table  2  of  2  ( 170 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
172858--173072	115	1.9	114	89	0	331	30	20	13	35	1.91
172970--173248	92	3.0	92	86	7	404	33	20	15	30	1.94
172961--173251	94	3.1	94	86	6	448	33	20	15	29	1.94
174251--174305	12	4.6	12	84	13	69	7	12	0	80	0.91
174256--174302	10	4.1	11	82	17	60	8	10	0	80	0.89
181650--181681	15	2.1	15	94	0	55	46	6	18	28	1.73
185502--185554	27	2.0	27	85	7	74	50	0	0	49	1.00
187163--187222	3	20.0	3	83	6	77	60	0	1	38	1.07
187159--187222	12	5.2	12	88	9	94	59	0	1	39	1.07
191081--191216	60	2.3	60	80	3	159	36	12	12	38	1.81
206513--206547	17	2.1	17	89	5	54	54	25	0	20	1.45
208068--208097	14	2.1	14	100	0	60	60	13	0	26	1.34
210534--210620	29	2.9	29	74	24	83	48	6	13	31	1.69
219054--219106	17	3.1	17	72	0	52	39	9	9	41	1.70
227057--227103	20	2.3	20	100	0	94	19	21	10	48	1.78
231676--231756	26	3.1	26	98	0	153	37	20	14	27	1.92
232654--232714	21	2.9	22	85	4	72	26	14	18	40	1.89
235157--235200	16	2.8	16	80	16	56	68	2	11	18	1.30
235496--235531	14	2.8	12	84	15	54	36	30	11	22	1.89
236840--236883	23	1.9	23	100	0	88	36	40	13	9	1.76
244283--244316	12	2.8	12	86	0	50	85	0	2	11	0.71
250079--250132	22	2.5	22	82	8	58	48	24	7	20	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
251440--251472	13	2.3	15	85	15	52	75	0	6	18	1.00
251512--251568	2	30.0	2	87	10	84	52	0	0	47	1.00
251530--251672	64	2.3	62	87	7	200	50	3	2	43	1.33
253558--253628	20	3.2	22	74	20	60	46	4	2	46	1.37
253425--253600	89	2.0	88	94	2	307	37	11	6	44	1.67
254617--254652	18	2.0	18	100	0	72	27	22	16	33	1.95
256500--256525	13	2.0	13	100	0	52	76	0	7	15	0.99
257166--257232	29	2.3	29	84	5	82	32	20	0	46	1.51
257166--257232	14	4.6	14	83	5	80	32	20	0	46	1.51
259233--259296	32	2.0	32	90	0	101	28	26	14	31	1.95
260646--260672	13	2.1	13	100	0	54	25	7	0	66	1.17
265785--265852	29	2.3	30	85	7	86	36	14	2	45	1.60
270489--270590	25	4.1	25	98	0	195	48	7	11	32	1.69
270669--270725	23	2.5	24	80	8	66	49	3	5	42	1.42
270669--270729	22	2.7	23	77	10	63	49	3	4	42	1.40
276541--276573	17	1.9	17	100	0	66	39	12	12	36	1.80
276579--276618	16	2.5	16	87	0	62	30	20	22	27	1.98
282227--282278	20	2.6	21	82	11	65	46	3	1	48	1.31
282261--282339	21	3.9	21	77	14	85	46	5	5	43	1.47
282254--282334	39	2.1	38	88	2	117	46	4	6	41	1.50
282276--282316	17	2.4	17	91	0	64	46	7	7	39	1.60
284680--284847	43	3.9	43	85	1	203	31	13	22	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
284679--284842	87	1.9	87	84	2	222	32	13	22	31	1.93
284872--285018	43	3.5	42	80	2	150	19	14	25	40	1.90
284778--285018	85	2.8	85	76	5	200	24	14	24	37	1.92
284888--285032	43	3.4	43	83	2	177	20	17	24	37	1.93
285009--285104	43	2.3	42	83	5	113	29	11	23	35	1.90
286167--286420	125	2.0	127	95	4	460	25	20	14	39	1.91

Tables:   1   2

The End!