genome.fa.s6460.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006460.1 Hibiscus syriacus cultivar Beakdansim tig00015655_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66577

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
492--548	31	1.9	30	86	10	82	59	1	5	33	1.30
9532--9713	75	2.5	73	85	5	249	33	16	11	38	1.85
9688--10061	39	9.7	39	84	2	443	31	16	14	37	1.89
9688--10046	116	3.1	117	84	3	440	32	16	14	37	1.89
10092--10247	59	2.6	59	81	4	172	30	24	11	33	1.91
10272--10412	42	3.4	41	86	1	183	31	17	14	37	1.89
10966--11002	16	2.2	17	95	4	67	40	51	8	0	1.32
12356--12414	7	7.4	8	76	18	52	23	0	5	71	1.06
24248--24290	20	2.2	20	86	0	59	30	13	20	34	1.92
28582--28855	11	27.0	10	69	26	129	58	1	1	39	1.16
28583--28826	13	18.4	13	69	19	78	58	1	1	38	1.16
28608--28897	2	156.5	2	68	22	172	55	1	2	40	1.22
30678--30798	5	24.2	5	100	0	242	39	0	0	60	0.97
30999--31053	2	27.5	2	100	0	110	50	0	0	49	1.00
31374--31413	13	3.1	13	100	0	80	52	0	0	47	1.00
31642--31690	2	24.5	2	100	0	98	51	0	0	48	1.00
31695--31721	13	2.1	13	100	0	54	29	14	14	40	1.86
41276--41309	2	17.0	2	100	0	68	50	0	0	50	1.00
42050--42096	3	16.0	3	95	4	87	31	0	0	68	0.90
42159--42197	18	2.1	19	85	4	53	33	0	2	64	1.08
42334--42472	60	2.3	60	85	4	174	33	17	16	33	1.92
42555--42589	18	1.9	18	88	11	54	34	5	17	42	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44929--45443	52	9.8	52	97	1	931	47	11	3	38	1.56
45891--45931	4	10.8	4	80	19	52	48	0	0	51	1.00
46410--46504	47	2.0	47	89	0	145	33	12	17	35	1.88
47377--47526	15	10.0	15	94	0	255	51	0	0	48	1.00
47377--47526	30	5.0	30	97	0	282	51	0	0	48	1.00
47497--47631	32	4.4	32	71	22	110	39	0	9	51	1.35
47525--47631	32	3.7	32	75	23	135	35	0	12	52	1.39
47514--47648	54	2.5	54	97	0	252	36	0	11	51	1.39
47557--47599	22	2.0	22	100	0	86	34	0	13	51	1.42
47658--47855	32	6.7	32	76	19	214	33	0	13	52	1.44
47633--47967	54	6.0	57	80	11	372	32	0	13	52	1.45
47525--47967	224	2.0	220	87	4	640	33	0	13	52	1.44
47749--47791	22	2.0	22	100	0	86	34	0	13	51	1.42
47602--47967	112	3.4	110	75	15	330	33	0	13	52	1.44
47780--47855	18	4.9	14	72	21	62	38	0	6	55	1.26
47525--47898	192	1.9	189	86	9	526	32	0	14	52	1.44
49308--49634	173	1.9	173	94	0	582	37	8	15	39	1.77
54776--54842	34	2.0	34	96	0	125	31	7	31	29	1.85
55057--55214	48	3.3	48	85	3	203	32	13	24	30	1.93
55034--55207	96	1.8	95	81	10	221	31	14	22	30	1.94
55237--55373	48	2.9	47	91	3	204	32	17	21	27	1.96
55082--55433	159	2.2	161	89	4	534	32	15	22	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55343--55563	65	3.4	64	91	2	334	33	16	20	29	1.95
55533--55708	48	3.6	48	89	4	273	31	18	22	27	1.97
56897--57052	9	18.1	9	72	23	108	12	11	0	75	1.04
56908--57049	76	1.9	75	85	11	200	11	11	0	76	1.01
56898--57030	67	1.9	70	86	11	195	12	11	0	75	1.04
56898--57048	14	10.3	15	76	19	126	11	11	0	76	1.01
60480--60505	2	13.0	2	100	0	52	50	0	0	50	1.00
60546--60585	4	9.8	4	84	15	55	72	0	0	27	0.85
62100--62154	24	2.3	24	90	0	83	25	40	0	34	1.56

Tables:   1

The End!