genome.fa.s6472.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006472.1 Hibiscus syriacus cultivar Beakdansim tig00015685_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  187534

Tables:   1   

This is table  1  of  1  ( 81 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4205--4248	18	2.5	18	88	3	63	6	18	36	38	1.77
6108--6698	301	2.0	300	87	1	860	33	16	16	33	1.91
7315--7400	26	3.4	26	73	13	90	25	4	4	65	1.32
8596--8625	10	3.0	10	100	0	60	10	10	20	60	1.57
11173--11223	3	16.0	3	80	11	57	70	0	27	1	0.98
11175--11211	10	3.8	10	89	3	58	70	0	27	2	1.01
13595--13655	26	2.3	26	100	0	122	36	21	9	32	1.86
14767--14911	24	6.2	24	65	20	92	27	4	4	63	1.33
20368--20508	70	2.0	70	87	2	203	25	14	24	35	1.93
27211--27352	72	2.0	71	83	1	176	34	24	20	20	1.96
28968--29017	24	2.1	23	81	3	55	18	44	22	16	1.87
29985--30054	31	2.2	32	87	5	99	14	18	30	37	1.90
33242--33285	18	2.5	18	88	3	63	6	18	34	40	1.77
34363--34389	12	2.2	12	100	0	54	33	7	7	51	1.58
35157--35747	301	2.0	300	87	0	858	33	16	17	33	1.92
36363--36448	26	3.4	26	73	13	99	25	3	4	66	1.27
37643--37672	10	3.0	10	100	0	60	10	10	20	60	1.57
39958--39998	10	4.3	10	87	6	59	70	0	26	2	0.99
43587--43672	26	3.4	26	73	13	99	25	3	4	66	1.27
44871--44900	10	3.0	10	100	0	60	10	10	20	60	1.57
47442--47482	10	4.3	10	87	6	59	70	0	26	2	0.99
51067--51139	13	5.8	14	68	27	56	27	4	5	63	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51059--51142	25	3.4	25	75	15	102	26	3	4	65	1.29
51059--51145	26	3.5	26	74	16	103	27	3	4	64	1.29
52332--52361	10	3.0	10	100	0	60	10	10	20	60	1.57
54629--54669	10	4.3	10	87	6	59	70	0	26	2	0.99
58246--58331	26	3.4	26	73	13	99	25	3	4	66	1.27
59518--59548	10	3.1	10	100	0	62	9	9	22	58	1.59
61812--61868	28	2.0	29	93	3	98	28	3	22	45	1.69
62437--62473	7	5.4	7	93	6	67	0	29	0	70	0.88
65522--65630	54	2.0	54	82	12	134	65	0	3	30	1.16
65988--66091	37	2.8	37	86	0	136	29	14	13	42	1.84
66635--67265	105	6.0	105	91	2	923	22	18	26	33	1.96
67465--67540	36	2.1	36	90	0	116	40	14	21	23	1.90
67661--67735	39	1.9	39	83	5	98	37	13	22	26	1.91
67440--67758	105	3.1	104	93	2	527	36	11	20	30	1.89
67807--67944	76	1.9	74	82	10	176	37	16	17	28	1.92
67829--68003	72	2.4	74	83	8	198	41	13	18	26	1.87
67881--67988	36	3.0	35	72	10	101	44	13	14	26	1.83
69144--69680	183	2.9	183	96	0	986	31	21	20	27	1.98
73167--73203	19	1.9	19	89	10	58	67	0	24	8	1.17
74397--74434	2	19.0	2	94	0	67	52	0	0	47	1.00
74624--74690	10	7.3	9	75	14	66	73	0	2	23	0.97
74625--74674	18	2.9	16	80	13	55	74	0	4	22	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74941--74983	18	2.5	17	85	7	61	67	2	4	25	1.22
75341--75445	37	2.8	37	83	0	129	31	12	14	41	1.82
77621--77854	88	2.7	89	94	2	409	31	25	22	20	1.98
80535--80560	13	2.0	13	100	0	52	15	23	46	15	1.83
84621--84658	17	2.2	17	95	0	67	15	47	23	13	1.81
91859--91909	19	2.7	18	85	8	66	19	31	25	23	1.98
95454--95493	2	20.5	2	94	5	73	50	0	0	50	1.00
98063--98112	24	2.1	24	88	3	75	56	6	22	16	1.62
98612--98735	61	2.0	60	82	10	146	31	17	4	45	1.69
98964--99112	60	2.5	59	78	11	176	42	7	18	32	1.78
103877--103915	15	2.6	15	91	0	60	5	17	23	53	1.63
105954--106021	29	2.3	29	87	5	93	42	23	5	27	1.77
105974--106122	29	5.2	28	74	11	99	40	24	6	28	1.78
105975--106129	84	1.8	84	87	2	231	41	23	6	27	1.79
106136--106187	18	2.9	18	91	2	88	11	21	48	19	1.80
112593--112704	29	3.9	29	75	4	120	40	24	6	29	1.79
112746--112798	18	3.0	18	86	2	72	13	20	47	18	1.82
123854--123885	2	16.0	2	100	0	64	50	0	0	50	1.00
129116--129194	24	3.3	24	98	0	149	45	7	20	26	1.77
132344--132431	31	2.8	31	73	11	81	20	27	27	25	1.99
138188--138213	2	13.0	2	100	0	52	50	0	0	50	1.00
138619--138662	21	2.1	21	82	0	52	34	15	40	9	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
140157--140251	44	2.2	42	85	7	120	25	18	26	29	1.98
140157--140251	21	4.4	21	75	9	77	25	18	26	29	1.98
149003--149042	18	2.3	18	91	4	64	5	12	40	42	1.64
149163--149188	12	2.2	12	100	0	52	69	0	0	30	0.89
149485--149617	54	2.5	55	90	3	216	28	19	21	30	1.98
149348--149944	191	3.1	191	87	2	806	27	16	22	32	1.95
149679--149802	54	2.3	54	88	0	176	29	18	20	31	1.97
151751--151789	2	21.0	2	85	15	57	51	0	0	48	1.00
154066--154816	55	13.8	54	87	3	922	30	25	14	30	1.94
159376--159409	8	4.2	8	96	0	59	50	8	0	41	1.34
167765--167797	2	16.5	2	100	0	66	51	0	0	48	1.00
169438--169485	2	24.0	2	95	0	87	50	2	0	47	1.12
181511--181551	18	2.3	18	87	4	57	7	17	36	39	1.77
181671--181696	12	2.2	12	100	0	52	69	0	0	30	0.89
183440--184011	301	1.9	301	87	0	831	33	15	17	33	1.91

Tables:   1

The End!