Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006495.1 Hibiscus syriacus cultivar Beakdansim tig00015796_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  107480

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2167--2200
13
2.6
13
90
9
52
26
17
8
47
1.77
4370--4408
20
2.0
20
89
0
60
28
33
23
15
1.95
5961--5996
18
2.0
18
88
0
54
50
2
38
8
1.47
15279--15316
19
2.0
19
94
0
67
34
31
15
18
1.92
19853--19890
19
2.0
19
94
0
67
34
31
15
18
1.92
20082--20119
19
2.0
19
94
0
67
34
31
15
18
1.92
19750--20210
229
2.0
229
99
0
904
33
24
15
26
1.95
23563--23692
38
3.5
38
81
6
149
42
4
7
45
1.53
23673--23723
25
2.0
25
92
0
84
45
0
5
49
1.26
23763--23815
9
5.7
10
74
12
51
28
1
0
69
0.99
24832--24880
18
2.6
19
93
6
91
28
4
0
67
1.09
24867--24916
22
2.2
24
89
7
77
20
2
2
76
0.99
32772--32809
16
2.4
16
95
0
67
26
31
15
26
1.96
35754--35794
21
2.0
21
95
0
73
31
19
12
36
1.89
36994--37199
104
2.0
104
98
0
394
31
24
14
30
1.94
41689--41722
16
2.0
17
88
11
52
73
0
11
14
1.10
41689--41732
19
2.4
18
85
11
54
72
0
13
13
1.12
41685--41730
18
2.5
19
80
20
62
69
0
19
10
1.17
41740--41773
13
2.5
14
90
4
52
82
2
0
14
0.79
41726--41769
24
1.9
23
86
9
63
79
2
0
18
0.83
43110--43160
12
4.2
12
80
12
59
74
5
1
17
1.11
43213--43367
71
2.2
70
84
4
195
47
3
3
45
1.39
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43268--43523
38
6.9
37
75
10
211
45
5
3
45
1.44
43213--43523
75
4.2
72
77
10
224
45
6
4
44
1.48
46812--46843
12
2.7
12
95
0
55
40
0
0
59
0.97
48251--48275
2
12.5
2
100
0
50
48
0
0
52
1.00
49870--49907
17
2.4
17
86
8
53
7
15
44
31
1.75
50996--51040
3
14.3
3
86
9
63
66
0
2
31
1.04
50996--51040
22
2.0
22
87
8
65
66
0
2
31
1.04
51158--51213
16
3.5
16
95
0
103
7
19
33
39
1.79
51158--51226
32
2.2
32
86
5
95
13
17
30
39
1.87
59745--59784
21
1.9
21
89
0
62
10
25
40
25
1.86
59767--59824
23
2.8
21
84
12
75
18
25
34
20
1.96
62129--62167
19
2.1
19
95
0
69
20
38
15
25
1.92
62114--62275
65
2.5
65
85
3
211
30
25
16
27
1.96
68064--68120
22
2.7
21
82
12
64
33
21
17
28
1.96
69656--69699
21
2.1
21
83
8
54
11
34
15
38
1.84
70740--70778
19
2.1
19
90
0
60
20
35
15
28
1.93
70698--70886
65
2.9
64
80
7
213
31
23
16
28
1.96
70677--70906
64
3.6
64
80
6
216
29
25
17
27
1.97
85714--85759
21
2.1
22
84
11
60
65
4
0
30
1.12
90280--90439
60
2.7
60
81
5
180
40
4
19
36
1.72
92483--92527
2
22.5
2
100
0
90
48
0
0
51
1.00
92865--92889
5
5.0
5
100
0
50
80
0
20
0
0.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96370--96408
21
1.9
19
85
10
51
41
7
7
43
1.62
97305--97376
20
3.6
20
80
10
85
25
27
16
30
1.97
97251--97434
94
2.0
94
82
2
226
28
23
16
30
1.96
100333--101514
596
2.0
596
99
0
2330
38
15
14
31
1.87

Tables:   1

The End!