genome.fa.s6501.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006501.1 Hibiscus syriacus cultivar Beakdansim tig00015822_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  209197

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6903--6950	23	2.1	23	100	0	96	33	12	18	35	1.89
12075--12108	17	2.1	17	88	5	52	29	2	0	67	1.05
14361--14408	22	2.2	22	96	0	87	16	4	35	43	1.67
15019--15116	32	3.1	32	82	1	108	43	8	7	40	1.62
16507--16568	2	31.0	2	100	0	124	50	0	0	50	1.00
17557--17617	29	2.1	29	100	0	122	22	21	6	49	1.72
21718--21831	54	2.1	54	91	1	183	26	21	10	42	1.85
23419--23450	16	2.0	16	100	0	64	31	0	18	50	1.48
24287--24349	2	32.0	2	93	3	110	50	1	0	47	1.10
29514--29544	16	1.9	16	100	0	62	16	25	19	38	1.92
31289--31320	16	2.0	16	100	0	64	31	0	18	50	1.48
31963--31989	2	13.5	2	100	0	54	51	0	0	48	1.00
43701--43731	16	1.9	16	100	0	62	16	25	19	38	1.92
45502--45533	16	2.0	16	100	0	64	31	0	18	50	1.48
46180--46209	2	15.0	2	100	0	60	50	0	0	50	1.00
57665--57695	16	1.9	16	100	0	62	16	25	19	38	1.92
59466--59497	16	2.0	16	100	0	64	31	0	18	50	1.48
66701--66746	18	2.6	18	85	0	65	19	54	15	10	1.70
69594--69717	63	2.0	63	82	9	155	18	25	28	27	1.98
69594--69717	31	4.0	31	69	15	78	18	25	28	27	1.98
74209--74240	16	2.0	16	93	0	55	31	3	15	50	1.60
77482--77523	22	1.9	22	95	0	75	9	23	47	19	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77527--77579	9	5.7	9	76	8	52	28	30	24	16	1.97
77521--77580	19	3.2	19	86	6	79	26	26	26	20	1.99
84612--84806	83	2.3	83	84	0	264	31	18	18	31	1.95
84972--85064	41	2.3	41	79	3	98	26	18	18	36	1.94
85560--85636	40	1.9	41	81	2	93	24	15	20	38	1.92
89897--90012	43	2.7	43	86	1	151	25	12	18	42	1.87
89897--90078	44	4.2	44	78	4	181	23	13	20	42	1.87
93656--93710	14	4.1	14	90	6	71	56	0	0	43	0.99
93663--93710	2	25.0	2	89	8	73	54	0	0	45	0.99
98022--98064	18	2.4	18	80	0	50	18	41	20	18	1.90
98041--98083	13	3.3	13	83	0	59	18	39	23	18	1.92
100197--100315	24	5.0	24	83	4	141	26	14	20	39	1.90
100430--100524	43	2.2	43	98	0	181	15	10	36	36	1.82
102483--102532	23	2.2	23	89	3	75	22	6	10	62	1.48
113754--113808	28	2.0	28	82	3	67	50	1	16	30	1.55
115182--115229	21	2.3	21	88	0	78	43	12	18	25	1.85
119822--119861	21	1.9	21	100	0	80	37	15	20	27	1.92
119822--119869	21	2.3	21	92	0	78	39	12	18	29	1.88
121197--121234	20	1.9	20	88	0	58	21	26	18	34	1.96
124934--125014	28	2.8	28	75	7	74	41	6	16	35	1.73
132547--132617	24	3.0	24	97	0	133	47	18	21	12	1.81
134217--134386	60	2.8	59	78	1	160	33	5	22	38	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
135613--135651	19	2.1	19	95	0	69	43	12	28	15	1.83
151563--151693	60	2.2	61	83	9	171	39	12	32	15	1.84
151585--151691	30	3.6	30	92	2	171	38	13	31	16	1.87
151607--151769	30	5.6	29	81	10	93	41	12	28	17	1.85
151563--151711	60	2.5	60	79	6	160	40	13	30	15	1.86
151920--151971	16	3.2	16	74	15	54	40	0	1	57	1.10
161387--161583	30	6.6	30	85	3	238	37	13	32	16	1.88
161365--161583	90	2.4	90	81	6	248	38	13	32	15	1.86
161549--161613	33	2.0	33	87	0	94	50	10	26	12	1.72
161549--161627	33	2.4	34	81	8	92	50	8	29	11	1.68
161779--161835	16	3.7	15	76	17	62	36	1	1	59	1.18
162055--162084	15	2.0	15	93	0	51	76	0	0	23	0.78
164246--164341	49	2.0	49	100	0	192	32	20	10	36	1.87
178567--178783	30	7.2	30	82	3	213	41	13	28	16	1.86
178548--178734	60	3.1	60	84	6	236	41	13	29	14	1.85
181476--181504	15	2.0	15	93	6	51	58	13	13	13	1.63
181777--181840	21	3.0	21	81	4	74	25	23	21	29	1.99
182689--182724	7	5.1	7	86	0	54	27	25	2	44	1.68
187185--187213	15	2.0	15	93	6	51	51	13	13	20	1.75
187487--187550	21	3.0	21	81	4	74	25	23	21	29	1.99
188412--188451	7	5.7	7	84	0	53	30	20	0	50	1.49
188403--188450	21	2.3	21	92	0	78	29	20	2	47	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
188401--188451	14	3.6	14	86	0	66	29	21	1	47	1.62
189616--189654	18	2.2	18	100	0	78	25	23	17	33	1.96
189825--189925	50	2.0	50	100	0	202	50	15	5	27	1.67
191826--191875	16	2.8	18	88	11	77	24	22	28	26	1.99
192904--192948	20	2.2	20	84	11	56	44	2	0	53	1.13
193835--193954	61	1.9	60	81	9	143	34	21	4	40	1.73
194098--194246	60	2.5	59	85	5	192	43	4	18	33	1.70
194097--194185	29	2.9	31	66	9	76	41	4	20	33	1.72
198478--198502	13	1.9	13	100	0	50	40	8	4	48	1.51
201303--201395	3	31.3	3	97	2	179	0	33	0	66	0.92
203733--203836	32	3.2	32	90	0	145	22	16	30	30	1.95
204962--205040	26	3.0	26	94	3	133	25	13	20	40	1.89

Tables:   1

The End!