genome.fa.s6513.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006513.1 Hibiscus syriacus cultivar Beakdansim tig00015867_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  291456

Tables:   1   2   

This is table  2  of  2  ( 174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
212253--212279	2	13.5	2	100	0	54	51	0	0	48	1.00
212559--212862	30	10.1	30	95	0	529	31	23	22	23	1.99
214050--214094	21	2.1	21	87	0	63	15	24	28	31	1.96
217134--217172	2	19.5	2	100	0	78	51	0	0	48	1.00
218617--218663	24	2.0	24	95	0	85	51	8	10	29	1.66
221481--221763	58	4.9	58	82	6	294	32	19	12	34	1.90
221742--221788	23	2.0	23	91	0	76	25	25	19	29	1.98
221683--221847	82	2.0	82	92	0	276	28	21	15	35	1.93
221648--221904	141	1.8	140	90	0	415	29	20	13	36	1.91
221591--221965	200	1.9	198	86	2	536	30	19	13	36	1.90
221765--222254	59	8.3	59	92	0	793	29	20	12	37	1.89
227701--227866	28	5.8	29	81	9	171	33	3	18	44	1.67
227706--227841	29	4.8	28	87	5	166	36	3	16	42	1.66
227798--227891	29	3.2	30	78	6	84	35	2	12	50	1.53
235199--235235	19	1.9	19	94	0	65	18	29	29	21	1.97
235200--235270	19	3.9	18	83	12	58	18	32	26	22	1.97
235228--235277	17	2.8	18	81	6	66	18	40	22	20	1.92
235279--235445	29	5.8	28	79	8	167	35	4	17	42	1.69
235280--235457	58	3.1	56	80	4	187	36	3	17	41	1.69
235286--235463	29	6.2	28	74	10	112	35	3	17	43	1.66
237586--237643	23	2.5	23	82	2	71	34	24	18	22	1.96
237635--237714	23	3.4	24	74	3	74	35	23	17	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
237814--237973	57	2.8	57	79	7	171	36	18	5	39	1.74
239376--239405	14	2.1	14	100	0	60	30	6	30	33	1.83
247887--247916	6	5.0	6	100	0	60	0	33	33	33	1.58
252808--252868	3	20.0	3	83	3	68	57	1	0	40	1.08
252838--252873	18	2.0	18	100	0	72	55	0	0	44	0.99
257343--257385	20	2.2	20	95	0	77	30	34	16	18	1.93
257343--257551	65	3.2	65	78	13	216	31	23	18	26	1.97
257391--257551	65	2.5	64	89	5	245	31	21	18	28	1.97
262552--262599	20	2.4	20	85	0	60	29	20	16	33	1.95
262329--262705	119	3.2	119	91	0	601	32	15	17	34	1.92
262668--262726	21	2.8	21	97	0	109	28	16	18	35	1.93
262927--262962	19	1.9	18	94	5	63	44	0	0	55	0.99
263050--263086	17	2.2	17	90	0	56	21	45	24	8	1.78
264860--264917	3	20.7	3	81	13	70	37	1	0	60	1.07
264860--264917	14	4.1	14	77	16	66	37	1	0	60	1.07
264860--264915	17	3.4	17	90	2	87	37	1	0	60	1.07
266127--266196	29	2.4	30	84	13	85	37	8	1	52	1.41
283042--283150	42	2.6	42	92	0	182	20	12	16	50	1.77
283341--283387	19	2.4	20	85	3	60	42	0	0	57	0.98
283338--283418	28	2.8	30	80	15	82	48	1	0	50	1.08
283355--283441	23	3.7	23	73	13	86	47	1	0	51	1.08
283418--283496	28	2.7	28	77	16	72	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
283454--283506	20	2.7	20	78	16	65	49	0	0	50	1.00
283457--283499	22	2.0	20	86	8	59	46	0	0	53	1.00
283501--283545	23	2.0	23	86	0	63	53	2	2	42	1.25
283603--283661	28	2.1	27	81	9	66	57	3	0	38	1.15
283832--283864	14	2.4	14	90	5	50	33	18	12	36	1.88
283874--283968	15	6.4	15	83	7	104	34	16	8	40	1.79
283874--283977	30	3.5	31	81	7	135	32	17	7	42	1.77
283874--283986	60	1.9	59	83	8	149	35	16	7	39	1.78
285364--285397	17	2.1	17	88	5	52	70	5	23	0	1.09
286982--287045	23	2.7	23	80	2	74	45	15	17	21	1.85

Tables:   1   2

The End!