genome.fa.s6529.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006529.1 Hibiscus syriacus cultivar Beakdansim tig00015910_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  646883

Tables:   1   2   3   

This is table  3  of  3  ( 315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
466307--466484	19	9.4	19	97	0	320	45	17	21	15	1.85
466487--466544	20	2.9	20	89	0	89	18	22	20	37	1.94
467604--467657	24	2.2	24	90	0	81	24	16	20	38	1.92
467832--467856	12	2.1	12	100	0	50	72	0	28	0	0.86
470150--470280	19	7.7	19	66	23	94	42	19	22	14	1.88
470150--470276	33	3.8	33	88	4	202	42	19	22	14	1.88
470151--470283	66	2.0	66	97	0	248	41	19	22	16	1.90
470439--470475	14	2.6	14	86	0	56	45	21	0	32	1.52
471831--471897	21	3.2	21	68	4	55	19	20	35	23	1.95
471831--471953	42	2.9	41	80	7	113	22	17	36	22	1.95
473953--474132	19	9.8	19	74	14	119	44	22	21	11	1.84
473978--474076	33	3.0	33	87	1	135	39	27	22	11	1.88
474048--474137	19	4.7	19	91	2	144	46	23	18	11	1.81
474048--474132	39	2.2	38	93	2	143	48	23	17	10	1.78
474133--474213	19	4.5	19	74	16	73	11	17	24	46	1.80
474730--474782	20	2.7	20	93	0	88	26	20	28	24	1.99
474751--474845	41	2.3	41	80	3	102	21	20	23	35	1.96
474895--474935	21	2.0	21	85	0	55	34	31	17	17	1.93
475436--475466	16	1.9	16	100	0	62	19	35	25	19	1.95
475469--475500	2	17.0	2	87	12	50	50	0	0	50	1.00
475721--475771	14	3.5	14	79	10	57	39	27	15	17	1.90
478814--478877	13	5.5	13	78	14	52	60	0	1	37	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
478823--478909	16	5.3	16	77	10	68	59	0	1	39	1.05
478820--478909	32	2.8	32	78	18	98	60	0	1	38	1.04
479448--479499	15	3.1	16	70	20	52	34	1	0	63	1.06
481058--481128	31	2.2	33	87	7	103	45	1	11	42	1.48
489347--489377	16	1.9	16	93	0	53	54	3	3	38	1.32
492287--492355	29	2.4	30	74	16	81	33	5	18	42	1.75
493616--493654	19	2.1	19	86	13	55	30	5	5	58	1.41
495082--495201	40	3.1	39	67	13	111	42	6	9	41	1.63
495943--496004	14	4.5	14	80	11	74	41	4	0	53	1.22
495938--495989	7	7.6	7	78	20	56	42	3	0	53	1.19
495938--496014	20	3.8	21	80	11	88	44	5	0	50	1.24
496127--496305	2	92.5	2	69	20	105	46	4	3	45	1.39
496926--496972	21	2.2	21	78	14	51	38	25	17	19	1.92
496933--496976	21	2.0	22	87	12	65	40	25	13	20	1.89
502188--502500	156	2.0	156	100	0	626	19	8	32	39	1.83
507768--508014	66	3.7	66	79	3	260	43	24	10	21	1.83
527929--527953	6	4.2	6	100	0	50	0	36	32	32	1.58
530905--530942	9	4.2	9	80	12	51	34	2	0	63	1.09
533270--533324	20	2.6	20	78	18	58	49	3	1	45	1.30
535010--535094	37	2.3	37	86	6	120	42	20	4	32	1.72
539631--539715	37	2.3	37	86	6	120	42	20	4	32	1.72
539756--540348	144	4.1	144	83	1	715	36	10	18	34	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
539756--540348	287	2.1	287	87	1	850	36	10	18	34	1.85
541670--541701	14	2.3	14	94	0	55	37	15	21	25	1.93
543656--543959	108	2.8	108	84	4	349	38	12	14	34	1.83
544507--544692	98	1.9	99	84	3	250	33	15	12	37	1.86
544644--544715	23	3.1	23	83	0	81	31	13	16	37	1.88
544546--544898	121	2.9	121	87	0	456	34	14	13	37	1.85
544765--544836	23	3.1	23	80	7	92	31	12	18	37	1.88
544811--545142	75	4.4	75	82	3	346	35	11	11	41	1.77
544809--545142	149	2.2	149	83	2	411	35	11	11	41	1.77
547904--547974	29	2.4	30	79	4	83	52	4	19	23	1.64
548544--548586	20	2.2	20	91	0	68	32	11	20	34	1.89
552033--552112	21	3.8	21	79	9	81	17	25	35	22	1.95
552054--552114	20	2.9	20	87	7	77	19	26	32	21	1.97
563914--563998	34	2.5	34	94	0	152	29	15	25	29	1.96
565193--565274	27	3.2	26	70	14	71	53	0	1	45	1.08
565314--565360	23	2.0	23	88	8	69	46	4	2	46	1.34
565349--565423	22	3.4	21	78	10	71	45	0	4	50	1.20
568260--568333	24	3.0	25	74	5	71	25	16	24	33	1.95
568333--568386	24	2.2	24	80	0	63	22	18	22	37	1.95
574536--574593	28	2.1	28	83	3	73	34	17	10	37	1.84
577743--578115	190	2.0	190	87	4	538	39	6	8	45	1.59
578090--578156	34	2.0	34	85	11	93	37	4	8	49	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
578242--578296	28	2.0	27	89	3	83	36	14	9	40	1.78
581499--581906	189	2.1	191	85	3	563	38	6	10	44	1.65
581787--581907	62	2.0	61	81	6	145	38	4	10	45	1.61
591348--591457	44	2.5	45	83	1	132	28	34	18	19	1.95
604325--604361	20	1.9	19	89	10	58	43	10	21	24	1.84
612115--612148	17	2.1	16	88	5	50	61	5	17	14	1.52
616554--616665	29	3.8	29	92	1	179	39	12	14	33	1.83
621339--621422	29	2.9	29	94	1	150	40	13	14	32	1.84
638667--638725	29	2.0	29	100	0	118	23	13	13	49	1.78

Tables:   1   2   3

The End!