genome.fa.s6530.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006530.1 Hibiscus syriacus cultivar Beakdansim tig00015919_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  612433

Tables:   1   2   3   4   

This is table  4  of  4  ( 440 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
523915--524137	55	4.1	55	81	2	270	26	18	26	28	1.98
523916--524133	110	2.0	109	86	4	305	27	18	26	27	1.98
524214--524737	67	7.9	67	87	1	698	30	18	23	27	1.97
524615--525235	96	6.3	96	66	17	320	32	18	23	25	1.97
524546--524900	163	2.2	163	86	2	473	31	17	23	26	1.97
524482--524967	230	2.1	230	86	0	668	31	17	23	27	1.97
524711--525275	67	8.4	67	91	1	846	32	18	23	24	1.97
524212--524804	201	3.0	195	78	11	555	31	18	23	26	1.97
533418--533483	30	2.2	31	97	2	125	40	6	12	40	1.67
539540--539576	18	2.0	19	89	5	58	21	35	27	16	1.94
542016--542081	30	2.2	31	94	2	116	42	6	10	40	1.64
543557--543583	3	9.0	3	100	0	54	66	0	0	33	0.92
544719--544766	2	24.0	2	100	0	96	50	0	0	50	1.00
545056--545144	27	3.3	27	100	0	178	46	6	12	34	1.68
546371--546552	76	2.4	76	88	0	276	38	18	12	30	1.88
547054--547085	2	16.0	2	100	0	64	50	0	0	50	1.00
547813--547854	3	14.0	3	100	0	84	33	0	0	66	0.92
551961--552006	17	2.7	17	100	0	92	26	10	30	32	1.90
559338--559412	39	1.9	39	82	15	93	46	12	14	26	1.79
561080--561921	134	6.3	133	80	4	809	33	20	16	30	1.94
561080--561921	268	3.2	266	83	2	1017	33	20	16	30	1.94
563848--563891	3	14.7	3	80	0	52	63	0	4	31	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
563850--563902	27	2.0	27	88	0	79	62	1	5	30	1.29
564028--564700	82	8.2	82	83	4	772	21	19	20	38	1.94
564094--564697	163	3.7	164	87	2	806	21	19	20	38	1.93
564653--564875	55	4.1	55	78	3	234	26	17	24	30	1.97
564654--564877	110	2.0	109	84	2	288	27	17	25	29	1.98
564951--565478	67	7.9	67	86	3	692	31	18	22	26	1.97
565065--565171	38	3.1	38	66	23	97	35	16	22	25	1.95
565355--565559	96	2.1	96	90	0	320	30	20	21	27	1.98
565285--565636	163	2.2	163	85	4	453	31	17	24	26	1.97
565220--565705	230	2.1	230	86	0	677	31	17	23	27	1.97
565450--566014	67	8.4	67	88	2	803	31	18	24	25	1.97
564951--565543	201	3.0	195	80	10	584	31	18	22	26	1.97
565153--565773	297	2.1	297	85	2	836	30	18	23	27	1.97
565785--565894	29	3.5	29	66	20	76	29	19	22	29	1.98
565814--566012	38	5.7	38	66	22	148	31	20	23	25	1.98
577418--577562	76	1.9	76	87	2	211	41	20	8	29	1.81
577601--577782	76	2.4	76	89	0	285	37	19	12	30	1.89
579037--579139	3	34.0	3	98	1	197	33	0	0	66	0.92
579386--579430	14	3.0	14	82	17	63	13	22	37	26	1.91
579386--579433	17	3.0	17	91	8	75	12	22	39	25	1.89
582146--582199	26	2.1	26	82	6	65	57	11	0	31	1.34
585167--585245	34	2.5	31	83	8	106	32	0	1	65	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
585172--585233	3	20.0	3	85	12	81	30	0	1	67	1.00
585167--585241	9	7.0	11	74	17	61	32	0	1	66	1.00
587540--587590	19	2.6	21	82	11	56	47	7	1	43	1.43
589180--589323	74	1.9	74	97	0	270	27	25	30	16	1.97
589689--589725	12	2.7	14	80	19	51	13	21	13	51	1.75
590481--590615	66	2.0	66	100	0	270	35	21	11	31	1.90
591053--591115	26	2.5	27	87	10	89	74	3	19	3	1.09
591052--591144	27	3.1	31	71	24	90	72	6	18	3	1.20
591053--591182	22	4.9	25	72	23	90	73	5	18	3	1.16
591070--591126	14	4.2	13	78	15	53	75	3	19	1	1.04
591061--591183	38	3.1	39	77	17	135	73	4	17	3	1.14
592062--592120	24	2.5	24	100	0	118	37	13	3	45	1.60
592929--593122	35	5.5	35	80	7	169	35	18	11	35	1.87
593112--593308	104	1.9	105	83	5	256	34	18	9	37	1.84
593443--593542	29	3.5	27	80	10	101	27	11	16	46	1.80
593424--593649	122	1.8	124	81	7	282	26	14	15	44	1.84
593610--593695	30	2.9	29	81	5	82	25	19	11	43	1.85
593727--593791	31	2.1	30	83	11	78	32	16	12	38	1.86
593639--593850	97	2.2	96	80	8	225	27	17	12	41	1.86
593736--593860	32	3.9	32	70	12	85	27	16	12	43	1.85
594068--594123	28	2.0	29	92	3	96	21	16	16	46	1.84
594221--594425	43	4.7	44	74	13	192	25	32	20	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
594143--594384	40	5.8	40	74	13	177	23	33	19	22	1.97
594190--594506	131	2.4	131	89	2	478	24	32	19	23	1.98
594726--594791	3	22.0	3	92	6	98	28	0	0	71	0.87
594712--594803	12	7.8	12	77	18	61	32	0	0	67	0.91
597101--597151	19	2.6	21	82	11	56	47	7	1	43	1.43
597531--597564	2	17.0	2	100	0	68	50	0	0	50	1.00
600498--600535	12	3.2	12	85	7	51	7	18	0	73	1.06
600505--600557	19	2.7	19	81	18	56	3	16	0	79	0.88
600505--600558	20	2.7	19	75	16	56	3	16	0	79	0.87
600754--601468	237	3.0	236	86	2	968	33	17	16	32	1.92
601235--601971	259	2.9	257	84	2	924	33	16	16	33	1.92
603002--603038	3	12.3	3	100	0	74	67	0	0	32	0.91
603371--603484	42	2.8	41	74	5	113	32	21	21	24	1.98
603164--603862	256	2.7	256	87	0	968	34	18	13	33	1.90

Tables:   1   2   3   4

The End!