genome.fa.s6536.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006536.1 Hibiscus syriacus cultivar Beakdansim tig00015951_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  109527

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13796--13856	28	2.2	28	88	2	88	44	1	1	52	1.20
23501--23553	25	2.1	25	96	0	97	20	32	15	32	1.93
26238--26291	21	2.6	21	90	0	90	29	22	37	11	1.89
35878--35932	26	2.1	26	82	0	65	21	7	27	43	1.79
36929--37022	24	3.9	24	81	2	116	29	22	24	23	1.99
36929--37022	49	1.9	48	82	2	116	29	22	24	23	1.99
37178--37249	15	4.9	15	77	5	67	34	19	6	38	1.79
37871--37912	21	2.0	22	95	4	77	30	21	9	38	1.85
48382--48443	23	2.7	23	84	0	79	38	4	19	37	1.73
48480--48567	23	3.8	23	92	0	140	35	11	18	35	1.86
48959--49008	23	2.2	23	88	0	73	34	18	10	38	1.84
48943--49200	87	3.0	86	91	2	408	32	12	10	43	1.78
49131--49182	23	2.3	23	82	0	68	36	13	9	40	1.77
49416--49468	22	2.4	21	76	17	63	45	3	0	50	1.19
52421--52448	2	14.0	2	100	0	56	50	0	0	50	1.00
52470--52503	17	2.0	17	88	11	52	64	0	5	29	1.17
52509--52541	16	2.1	16	88	11	50	60	0	0	39	0.97
53910--53976	3	21.7	3	82	11	82	62	0	0	37	0.95
54133--54668	76	7.0	76	95	0	955	33	21	21	23	1.98
54146--54668	229	2.3	228	95	0	929	33	21	21	23	1.97
54672--54996	166	2.0	166	91	3	537	38	12	14	35	1.83
55513--55586	22	3.4	22	92	0	112	40	12	10	36	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57849--58182	114	2.9	114	90	0	535	32	20	14	32	1.93
60320--60370	8	6.0	8	78	13	57	1	15	0	82	0.76
60312--60377	28	2.3	29	79	10	82	1	18	0	80	0.79
60358--60410	26	2.0	26	92	3	88	3	16	11	67	1.35
63292--63330	14	2.8	14	85	11	53	58	7	17	15	1.59
65597--65627	15	2.0	16	93	6	55	74	0	0	25	0.82
66515--66561	2	24.0	2	95	4	87	51	0	0	48	1.00
66587--66620	17	2.0	17	88	11	52	64	0	5	29	1.17
66617--66658	16	2.6	16	85	14	52	64	0	0	35	0.94
68032--68104	3	23.7	3	83	10	94	63	0	0	36	0.95
68473--68583	42	2.7	41	94	4	195	16	14	19	49	1.79
68787--68898	54	2.1	52	79	9	120	44	0	2	51	1.21
68861--68938	31	2.7	28	82	9	86	42	0	2	55	1.13
68943--68987	23	2.0	23	86	0	63	53	2	2	42	1.25
69084--69146	21	3.3	19	71	22	60	50	0	3	46	1.17
69270--69297	14	2.0	14	100	0	56	42	14	14	28	1.84
69300--69338	20	2.0	20	84	0	51	33	17	7	41	1.79
69312--69354	14	2.9	15	79	6	61	30	20	6	41	1.79
70306--70387	41	1.9	40	83	11	101	50	3	2	43	1.33
70929--70988	23	2.6	23	81	0	57	40	5	18	36	1.72
70878--71063	87	2.1	87	94	2	320	40	9	15	34	1.79
71065--71780	197	3.6	196	87	5	933	31	15	14	39	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71842--71886	16	2.9	16	80	12	58	55	0	0	44	0.99
71948--72016	24	2.9	25	81	14	83	42	1	2	53	1.24
72628--72691	27	2.4	27	85	15	80	46	1	1	50	1.20
72681--72725	14	3.1	15	84	6	58	55	2	0	42	1.12
72734--72786	24	2.2	25	80	12	67	39	0	5	54	1.24
73041--73090	23	2.2	23	88	0	73	32	18	10	40	1.83
73118--73168	23	2.2	23	89	0	75	33	19	9	37	1.85
73025--73253	87	2.6	87	90	2	343	31	14	10	43	1.79
73216--73316	23	4.4	23	86	3	132	38	16	6	37	1.76
73307--73462	64	2.4	64	93	0	258	32	13	10	44	1.77
73426--73510	23	3.7	23	93	0	134	35	21	5	37	1.78
79506--79544	18	2.1	17	86	13	51	56	2	0	41	1.13
86592--86630	13	2.9	13	88	3	51	38	10	7	43	1.67
88020--88049	15	2.1	15	93	6	53	20	0	23	56	1.42
88368--88401	12	2.7	13	86	9	52	44	8	5	41	1.60
89260--89304	19	2.4	19	96	0	81	13	13	28	44	1.81
89956--89999	18	2.5	17	85	14	54	54	0	4	40	1.21
92780--92814	7	5.0	7	100	0	70	14	42	0	42	1.45
95668--95717	23	2.2	23	92	0	82	38	8	22	32	1.83
95631--95880	87	2.9	87	92	0	428	40	12	14	32	1.83
95755--95806	23	2.3	23	86	0	77	42	9	17	30	1.81
98914--100028	200	5.6	200	93	1	1850	27	14	13	44	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99855--100202	174	2.0	172	94	1	615	27	13	12	46	1.79
100027--100526	202	2.5	201	93	2	830	27	14	14	44	1.83
103108--103148	15	2.8	15	88	3	66	26	0	53	19	1.45
103520--104383	199	4.3	199	93	0	1462	27	14	15	42	1.87
104728--104777	19	2.6	19	93	0	82	58	10	2	30	1.42
108183--108232	19	2.6	20	87	9	77	38	18	0	44	1.50
108751--108776	13	2.0	13	100	0	52	30	15	0	53	1.42
108972--108996	11	2.3	11	100	0	50	44	0	12	44	1.41
108811--109173	188	1.9	189	86	5	520	27	14	12	44	1.82

Tables:   1

The End!