genome.fa.s6537.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006537.1 Hibiscus syriacus cultivar Beakdansim tig00015959_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  372459

Tables:   1   2   

This is table  2  of  2  ( 151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
301379--301421	13	3.2	13	90	3	59	37	2	11	48	1.52
313216--313259	17	2.6	17	92	0	70	29	29	2	38	1.69
314697--314736	20	2.0	21	85	5	55	37	12	5	45	1.64
315281--315349	33	2.1	33	84	10	88	43	2	4	49	1.37
315761--315791	16	1.9	16	93	0	53	29	16	32	22	1.95
322067--322115	15	3.1	16	82	8	55	65	2	0	32	1.04
325209--325777	190	3.0	188	88	2	845	28	24	11	35	1.90
328809--328851	22	1.9	23	85	4	61	27	23	16	32	1.96
328808--328857	22	2.2	23	78	3	57	24	30	14	32	1.94
336672--336703	16	2.0	16	100	0	64	37	31	12	18	1.88
346541--346589	23	2.1	23	88	0	71	36	16	14	32	1.89
346564--346731	74	2.3	75	89	1	257	38	14	15	32	1.87
346653--346836	98	1.9	98	85	1	253	39	14	12	34	1.83
346503--346904	172	2.3	173	88	0	590	39	14	13	32	1.85
346747--346904	75	2.1	75	85	2	210	40	14	12	32	1.83
353953--353978	10	2.6	10	100	0	52	53	0	30	15	1.42
354543--354657	60	1.9	60	83	3	151	20	32	28	18	1.96
358061--358630	116	4.7	115	82	8	489	23	22	19	33	1.97
358270--358744	127	3.8	128	88	3	694	21	21	22	34	1.97
358270--358744	253	1.9	252	88	3	713	21	21	22	34	1.97
358873--359000	63	2.0	63	95	3	231	39	1	22	36	1.64
359018--359156	57	2.5	55	87	10	192	33	10	23	31	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
359245--359320	34	2.5	28	74	23	82	38	5	3	52	1.43
359848--359887	21	1.9	21	94	0	71	22	22	37	17	1.94
359846--359893	21	2.3	20	86	10	69	18	25	37	18	1.94
361487--361535	23	2.0	26	88	11	77	63	4	0	32	1.13
361487--361552	24	2.7	25	84	9	75	63	3	0	33	1.10
361726--361752	13	2.1	13	100	0	54	22	25	14	37	1.93
362162--362204	14	3.1	14	72	0	50	60	0	0	39	0.97
364577--364635	23	2.5	23	75	2	64	40	3	0	55	1.16
370923--370948	13	2.0	13	100	0	52	46	23	0	30	1.53

Tables:   1   2

The End!