genome.fa.s6539.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006539.1 Hibiscus syriacus cultivar Beakdansim tig00015966_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101931

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5885--5936	24	2.2	24	82	6	61	50	7	3	38	1.50
7585--7632	20	2.4	20	77	19	55	35	2	0	62	1.07
7813--7847	9	3.8	9	92	3	52	31	11	20	37	1.88
10995--11095	3	33.0	3	83	4	112	64	1	4	28	1.25
19866--19936	34	2.0	36	84	10	94	47	4	1	46	1.30
23816--23846	16	1.9	16	93	0	53	35	9	25	29	1.88
30843--30907	27	2.4	27	100	0	130	13	18	23	44	1.85
39792--39846	23	2.4	23	85	8	69	67	0	7	25	1.16
39844--39888	24	1.9	23	82	13	56	53	6	2	37	1.40
39856--40035	38	5.0	36	77	11	158	44	6	4	45	1.48
39852--40263	75	5.4	75	70	19	212	45	6	3	43	1.48
40002--40078	25	3.0	25	72	7	73	46	5	2	45	1.39
40021--40050	15	1.9	16	93	6	53	53	6	0	40	1.27
39913--40163	124	2.0	127	94	3	447	43	6	4	45	1.50
40055--40263	38	5.6	38	77	12	166	46	7	2	43	1.46
39879--40202	162	2.0	164	81	9	378	44	6	4	45	1.47
40037--40264	36	6.1	37	77	13	207	45	7	3	43	1.48
40039--40261	75	3.0	73	80	10	213	45	7	3	43	1.48
40878--41329	84	5.4	83	81	5	527	24	20	25	29	1.99
40794--41329	165	3.2	164	81	4	630	24	19	25	30	1.98
40874--41329	248	1.8	249	84	4	623	23	20	25	29	1.99
41349--42025	105	6.4	104	96	1	1147	22	17	26	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47221--47276	22	2.4	24	85	14	73	66	0	7	26	1.18
47286--47650	38	9.6	37	70	19	172	44	6	4	45	1.48
47312--47622	122	2.7	109	79	15	351	43	6	4	45	1.48
47452--47480	14	2.0	15	93	6	51	51	6	0	41	1.28
47344--47592	122	2.0	123	95	2	448	42	6	4	45	1.50
47485--47689	36	5.6	36	79	12	172	46	7	2	43	1.46
48492--48577	27	3.1	27	89	1	127	22	9	16	52	1.72
48506--48587	27	3.0	28	85	3	96	23	7	13	56	1.62
48565--48833	146	1.8	148	87	2	373	36	5	8	49	1.56
49312--49392	35	2.3	36	91	2	128	30	2	25	40	1.69
54227--54267	19	2.2	19	86	8	57	9	4	2	82	0.89
60956--60989	16	2.1	16	94	0	59	32	26	8	32	1.87
66821--66876	15	3.6	15	79	9	67	42	12	12	32	1.80
66824--66874	17	3.1	17	77	11	61	43	11	9	35	1.75
67046--67098	21	2.5	21	93	0	88	28	28	22	20	1.99
67294--67348	13	4.2	13	75	13	58	49	12	3	34	1.59
67334--67432	33	3.0	33	94	1	164	45	15	7	32	1.73
67427--67466	21	1.9	21	94	0	71	47	7	15	30	1.72
75828--75853	13	2.0	13	100	0	52	38	0	0	61	0.96
77972--78240	132	2.0	133	87	5	384	46	10	12	30	1.75
86192--86255	27	2.4	27	91	0	101	14	12	56	17	1.68
91380--91446	29	2.3	30	78	2	82	25	10	5	58	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91280--91494	30	7.3	30	71	9	156	20	12	8	58	1.60
91782--91817	5	7.2	5	87	0	54	16	2	2	77	1.00
91776--91817	15	2.7	15	81	3	57	16	4	2	76	1.07
94627--94655	15	1.9	15	100	0	58	34	17	34	13	1.89
97175--97226	27	1.9	27	92	0	86	44	25	13	17	1.85
98708--98741	2	17.0	2	100	0	68	50	0	50	0	1.00
99621--99689	10	7.1	10	76	12	72	18	23	30	27	1.98
99621--99691	19	3.7	19	88	5	90	18	25	29	26	1.98
99685--99725	17	2.4	17	95	0	73	17	41	24	17	1.89
99715--99744	7	4.4	7	91	8	53	16	30	30	23	1.96
99715--99744	13	2.2	14	94	5	53	16	30	30	23	1.96
101114--101152	17	2.3	17	81	0	51	28	2	7	61	1.37

Tables:   1

The End!