Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000658.1 Hibiscus syriacus cultivar Beakdansim tig00001280_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  243114

Tables:   1   2   

This is table  2  of  2  ( 141 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
210305--210377
3
24.0
3
94
2
128
35
0
0
64
0.94
211669--211715
20
2.3
21
78
10
62
25
2
8
63
1.34
211759--211803
25
1.9
24
82
13
58
44
0
0
55
0.99
216869--216905
13
2.7
14
91
8
67
24
29
29
16
1.96
216895--216952
17
3.4
17
97
0
107
15
24
43
17
1.87
216869--216905
7
5.4
7
93
6
67
24
29
29
16
1.96
216946--217034
19
4.7
19
90
5
135
26
30
25
16
1.97
216946--217033
9
9.3
9
79
9
95
27
30
26
15
1.96
223243--223372
65
2.0
65
100
0
260
36
16
18
27
1.93
224254--224290
13
2.7
14
91
8
67
24
29
29
16
1.96
224280--224337
17
3.4
17
97
0
107
15
24
43
17
1.87
224254--224290
7
5.4
7
93
6
67
24
29
29
16
1.96
224331--224419
19
4.7
19
90
5
135
26
30
25
16
1.97
224331--224418
9
9.3
9
79
9
95
27
30
26
15
1.96
229224--229260
3
12.3
3
100
0
74
67
0
0
32
0.91
230133--230164
16
1.9
17
93
6
57
81
0
6
12
0.87
232149--232240
23
4.0
23
78
14
91
29
23
26
20
1.99
232352--232395
23
1.9
23
90
0
70
27
25
29
18
1.98
238542--238617
23
3.3
23
70
14
66
32
21
25
21
1.97
238751--238787
18
2.1
18
100
0
74
37
10
16
35
1.83
241142--241212
29
2.4
29
74
4
72
29
14
1
54
1.48

Tables:   1   2

The End!