genome.fa.s6591.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006591.1 Hibiscus syriacus cultivar Beakdansim tig00016170_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  156397

Tables:   1   2   

This is table  2  of  2  ( 228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28472--28509	14	2.8	14	92	4	60	23	0	26	50	1.50
28593--28624	2	16.0	2	100	0	64	50	0	0	50	1.00
28989--29048	14	4.4	14	85	2	77	23	0	30	46	1.52
28043--29150	539	2.1	525	82	13	1294	35	9	11	43	1.72
28989--29048	7	8.7	7	85	3	68	23	0	30	46	1.52
29050--29142	48	1.9	48	87	8	136	34	6	5	53	1.49
29134--29211	2	39.0	2	82	10	97	47	1	2	48	1.23
29698--29760	28	2.2	28	86	5	83	17	1	28	52	1.54
29698--29744	14	3.4	14	82	5	60	17	0	27	55	1.42
30239--30282	21	2.1	21	88	12	65	15	0	29	54	1.42
30875--30911	14	2.7	14	95	4	67	21	0	29	48	1.50
30875--30917	14	3.1	14	90	3	52	18	0	32	48	1.48
30989--31065	15	5.3	15	83	12	90	42	0	3	53	1.19
30999--31053	2	29.0	2	82	17	73	47	0	1	50	1.11
30989--31070	17	5.4	16	80	18	95	42	1	3	52	1.26
31002--31077	21	3.6	21	74	15	59	42	2	3	51	1.34
31434--31471	13	2.8	14	96	4	69	21	0	28	50	1.49
31434--31477	7	6.4	7	78	5	54	18	0	31	50	1.47
31504--31607	2	54.0	2	78	11	110	45	4	0	49	1.30
31511--31607	15	6.4	16	81	13	68	45	5	1	48	1.31
31931--31985	21	2.6	21	85	8	76	20	0	30	49	1.49
31931--31994	7	9.1	7	82	0	65	18	0	32	48	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31946--31998	14	3.8	14	89	0	79	18	0	32	49	1.48
30972--31957	521	1.9	498	84	10	1299	36	8	11	43	1.72
32082--32129	2	24.0	2	81	8	53	47	2	4	45	1.33
33225--33261	13	2.8	13	91	0	56	16	43	18	21	1.88
33262--33337	29	2.6	29	85	0	98	21	6	26	46	1.75
40421--40475	9	5.6	10	79	12	69	16	21	27	34	1.95
40420--40458	19	2.0	20	90	5	62	20	20	23	35	1.96
40420--40468	10	4.8	11	78	16	61	18	20	24	36	1.94
42270--42307	7	5.4	7	100	0	76	13	0	39	47	1.42
42382--42413	13	2.5	13	94	0	55	40	0	9	50	1.35
42401--42453	20	2.7	20	88	5	72	35	7	11	45	1.69
42461--42487	13	2.1	13	100	0	54	55	0	0	44	0.99
42821--42873	21	2.5	21	79	11	63	16	1	26	54	1.53
42943--42995	20	2.5	20	72	6	52	37	9	5	47	1.60
42073--43481	542	2.7	527	84	9	1681	34	9	12	43	1.76
43330--43390	14	4.4	14	87	0	86	22	0	31	45	1.53
43330--43390	21	2.9	21	82	0	77	22	0	31	45	1.53
43330--43390	7	8.7	7	85	0	68	22	0	31	45	1.53
43684--43712	13	2.1	14	93	6	51	51	0	0	48	1.00
44033--44098	28	2.4	28	87	5	89	16	1	27	54	1.51
44020--44098	14	5.6	14	74	5	70	16	1	29	53	1.51
44020--44098	7	11.3	7	71	5	52	16	1	29	53	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44168--44239	20	3.5	20	81	7	83	38	6	5	48	1.53
44232--44290	23	2.4	25	81	15	79	55	0	1	42	1.09
44253--44301	26	1.9	25	84	12	64	53	2	4	40	1.32
44576--44619	21	2.1	21	88	12	65	15	0	29	54	1.42
44628--44729	49	2.1	47	82	8	116	38	7	5	48	1.57
44891--44919	13	2.1	14	93	6	51	51	0	0	48	1.00
45352--45386	2	17.0	2	94	5	61	48	2	0	48	1.16
45755--45802	14	3.4	14	80	11	62	18	0	31	50	1.48
45882--45917	18	1.9	19	94	5	65	38	0	13	47	1.44
44901--45893	528	1.9	524	90	3	1606	35	9	11	43	1.73
46069--46240	2	88.0	2	69	19	105	45	4	2	47	1.36
46452--46503	19	2.7	19	90	3	86	28	30	0	40	1.57
46575--46629	2	27.5	2	80	7	58	52	1	1	43	1.22
47132--47210	2	39.0	2	94	2	140	48	0	1	50	1.08
47334--47369	18	1.9	19	88	5	56	50	0	5	44	1.25
47140--47380	13	18.6	13	72	19	125	44	2	4	48	1.37
47333--47398	30	2.2	31	84	13	84	45	1	4	48	1.32
48523--48557	2	17.5	2	100	0	70	51	0	0	48	1.00
57698--57775	31	2.5	31	83	2	95	28	25	12	33	1.93
65578--65609	17	1.9	17	93	6	57	40	18	25	15	1.90
68438--68494	27	2.1	27	90	0	87	17	28	15	38	1.91
68443--68494	13	3.9	13	77	5	59	15	25	17	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73823--73863	2	20.5	2	100	0	82	51	0	0	48	1.00
79576--79636	32	1.9	32	86	0	86	21	22	31	24	1.98
85791--85835	21	2.1	21	87	0	63	31	28	24	15	1.96
87532--87598	22	3.0	22	95	2	116	19	26	28	25	1.99
90675--90719	21	2.1	21	87	0	63	31	28	24	15	1.96
92413--92479	22	3.0	22	95	2	116	19	26	28	25	1.99
98360--98406	23	2.0	23	100	0	94	42	12	0	44	1.42
98643--98680	20	1.9	20	88	0	58	21	26	10	42	1.85
101730--102017	81	3.6	81	83	1	247	29	23	9	38	1.85
101790--102031	81	3.0	81	86	0	358	29	23	10	36	1.88
101982--102440	68	6.8	68	92	0	740	31	25	14	28	1.94
102651--102868	59	3.8	59	83	7	256	37	20	8	33	1.83
103195--103413	95	2.3	96	85	4	284	25	22	15	36	1.93
103404--103457	20	2.7	20	83	11	65	27	20	18	33	1.96
108956--108995	12	3.4	12	86	6	55	60	0	2	37	1.11
110069--110108	12	3.3	12	83	13	55	45	0	0	55	0.99
114597--114658	3	20.7	3	74	12	56	62	3	3	30	1.26
114597--114660	24	2.7	23	83	11	76	64	3	3	29	1.24
114870--115248	134	2.8	133	89	1	564	22	18	32	25	1.97
115043--115248	43	4.7	43	68	17	136	22	19	33	24	1.97
115453--115512	27	2.2	27	85	5	77	41	11	13	33	1.80
115469--115695	91	2.5	93	76	7	227	43	14	12	29	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115637--115829	29	6.6	29	83	8	185	42	12	13	31	1.81
115825--116016	65	3.0	64	85	3	251	43	13	10	32	1.77
115910--115970	28	2.2	28	85	8	88	42	16	6	34	1.74
115979--116050	37	1.9	37	86	5	101	36	11	11	41	1.76
116075--116184	28	3.9	27	75	13	87	44	14	10	30	1.78
116496--116554	21	3.1	21	68	27	67	40	8	18	32	1.81
116579--116640	21	3.1	21	62	17	51	35	12	20	30	1.91
116573--116681	38	2.9	36	82	6	119	34	12	19	33	1.90
124080--124141	3	20.7	3	74	12	56	62	3	3	30	1.26
124080--124143	24	2.7	23	83	11	76	64	3	3	29	1.24
124353--124735	134	2.9	134	92	0	613	23	18	32	25	1.97
124402--124735	43	7.5	43	67	19	143	23	19	33	23	1.97
126152--126183	16	2.0	16	93	0	55	46	0	0	53	1.00
129076--129104	3	9.7	3	100	0	58	31	0	0	68	0.89
130822--130894	36	2.0	36	97	0	137	53	5	13	27	1.62
131140--131191	21	2.4	21	80	6	59	34	11	1	51	1.49
132316--132372	22	2.5	23	82	5	80	31	22	15	29	1.95
135916--135944	12	2.4	12	100	0	58	27	48	17	6	1.72
136781--136837	22	2.5	23	82	5	71	29	21	14	35	1.92
146427--146490	29	2.1	31	82	5	78	29	18	7	43	1.78

Tables:   1   2

The End!