genome.fa.s6592.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006592.1 Hibiscus syriacus cultivar Beakdansim tig00016171_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  276073

Tables:   1   2   

This is table  2  of  2  ( 178 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
203319--203382	20	3.2	20	67	18	53	43	10	18	26	1.83
203094--203851	117	6.7	117	85	5	895	39	14	20	25	1.91
203680--203722	21	2.0	21	86	13	61	51	9	20	18	1.74
204018--204058	3	13.7	3	80	19	50	34	0	2	63	1.08
204577--204605	14	2.0	15	93	6	51	44	0	0	55	0.99
204582--204624	17	2.4	18	85	11	54	34	2	0	62	1.08
204577--204624	18	3.0	15	85	14	53	39	2	0	58	1.10
204745--204787	18	2.2	20	84	15	56	34	11	0	53	1.37
205884--205953	34	2.1	34	84	10	90	51	8	4	35	1.52
205926--206327	190	2.1	190	88	2	610	45	9	5	39	1.61
212837--212874	18	2.1	19	85	14	53	42	10	2	44	1.52
214477--214522	24	1.9	25	86	8	69	56	10	15	17	1.67
220885--220924	5	8.0	5	86	10	55	80	0	2	17	0.83
220859--220924	18	3.5	18	78	17	64	75	0	3	21	0.93
220859--220924	30	2.1	31	83	10	82	75	0	3	21	0.93
220862--220922	15	4.1	15	76	16	63	77	0	3	19	0.91
221042--221248	37	5.5	37	78	14	192	43	11	3	41	1.57
221217--221273	26	2.3	26	90	6	91	45	10	3	40	1.56
221238--221342	41	2.5	42	74	7	108	41	8	4	44	1.56
221319--221360	22	2.0	21	85	4	57	42	9	4	42	1.58
221137--221370	101	2.3	100	81	11	246	41	9	3	44	1.56
222293--222325	15	2.3	15	89	5	50	12	12	15	60	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
224657--224697	18	2.2	19	86	4	57	65	0	4	29	1.13
226488--226591	29	3.6	29	94	0	181	37	0	13	49	1.42
226488--226682	29	6.7	29	79	5	117	41	2	9	47	1.48
226488--226621	58	2.3	58	84	3	171	39	0	11	48	1.44
226572--226680	30	3.7	30	75	4	107	44	3	5	46	1.44
228167--228248	40	2.0	40	100	0	164	43	9	21	24	1.83
228837--228879	21	2.0	21	91	8	70	20	11	2	65	1.36
231875--231925	15	3.2	16	79	17	54	78	7	13	0	0.96
231881--231970	23	3.9	21	74	20	65	76	7	14	1	1.06
232600--232643	22	2.0	22	90	0	70	40	22	11	25	1.87
234804--236380	106	14.9	106	92	0	2381	33	24	18	23	1.97
237595--237637	21	2.0	21	91	8	70	20	11	2	65	1.36
248711--248776	24	2.8	24	90	0	105	18	16	27	37	1.92
252542--252572	7	4.3	7	95	4	53	61	0	0	38	0.96
253851--253884	18	1.9	18	88	5	52	73	0	2	23	0.97
253913--254010	44	2.3	41	80	16	103	44	7	6	41	1.56
253912--254010	42	2.3	43	80	16	107	45	7	6	41	1.56
253965--254127	37	4.2	37	76	13	107	44	8	4	42	1.54
253988--254127	38	3.6	37	79	12	131	45	8	3	42	1.52
253988--254127	37	3.6	37	81	12	140	45	8	3	42	1.52
254123--254153	2	15.5	2	100	0	62	48	0	0	51	1.00
254174--254313	37	3.8	35	74	11	127	47	12	3	37	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
254174--254339	75	2.2	77	80	6	180	45	11	5	37	1.63
265954--266006	26	2.0	26	100	0	106	22	7	26	43	1.80
266633--266675	18	2.5	17	84	3	50	76	6	6	9	1.15
269602--269658	30	1.9	29	82	10	71	49	3	5	42	1.42
270858--270918	19	3.1	19	81	11	77	47	1	1	49	1.21
270940--271033	29	3.1	29	75	19	84	51	3	1	44	1.24
270934--271024	35	2.6	35	79	10	105	49	3	1	46	1.25
270906--270998	2	48.0	2	78	10	86	46	1	1	51	1.15
272123--272228	55	1.9	55	88	3	160	40	12	23	23	1.88
272178--272425	72	3.5	72	87	2	340	40	11	21	26	1.88
274020--274193	36	4.8	35	74	8	134	40	10	16	32	1.83
273999--274186	74	2.6	74	85	5	247	41	10	17	31	1.82
273963--274222	73	3.6	74	82	5	289	40	9	16	33	1.81
274075--274193	36	3.3	35	81	6	148	38	12	17	31	1.87

Tables:   1   2

The End!