genome.fa.s66.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000066.1 Hibiscus syriacus cultivar Beakdansim tig00000113_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77764

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6205--6276	37	1.9	37	88	0	108	20	26	13	38	1.90
15825--16253	218	1.9	222	90	6	694	45	7	7	39	1.61
16313--16363	20	2.5	20	75	9	59	54	9	13	21	1.67
16494--16535	19	2.3	19	92	8	70	50	11	16	21	1.77
18818--18881	32	2.0	32	81	6	76	29	0	45	25	1.54
20659--20702	18	2.4	18	85	10	63	31	2	6	59	1.36
20659--20706	19	2.6	19	90	3	71	31	2	8	58	1.39
20824--21784	199	4.9	198	95	2	1710	36	15	16	30	1.90
21745--21796	21	2.3	23	70	12	54	38	9	11	40	1.74
23253--23337	3	28.3	3	79	0	89	34	5	34	25	1.80
23242--23333	18	5.1	18	77	5	87	35	6	34	22	1.80
23245--23321	36	2.1	36	87	0	109	35	7	35	22	1.83
24827--25501	183	3.7	183	96	0	1210	34	14	16	33	1.90
27971--28035	25	2.6	25	80	0	85	35	9	13	41	1.77
28382--28530	23	6.5	23	88	0	217	34	5	19	40	1.74
28382--28530	46	3.2	46	96	0	271	34	5	19	40	1.74
28953--28989	18	2.1	18	89	0	56	32	5	10	51	1.60
29248--29330	39	2.1	39	90	0	139	48	19	14	18	1.81
29751--29823	23	3.2	23	88	0	101	34	4	21	39	1.73
30180--30243	23	2.8	23	90	0	101	35	4	21	37	1.75
30180--30251	23	3.1	23	84	7	92	34	4	22	38	1.73
29549--30593	429	2.5	429	96	1	1944	42	7	11	38	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30415--30456	22	1.9	22	85	9	59	50	4	0	45	1.23
37780--37846	3	22.0	3	84	14	84	67	1	0	31	1.00
37781--37865	12	7.2	11	75	9	53	69	1	0	29	0.96
37777--37864	18	5.1	18	82	15	98	68	1	0	30	0.97
38015--38349	43	7.8	43	72	14	242	24	19	30	24	1.98
38057--38386	40	7.7	43	74	15	219	23	19	31	24	1.98
38049--38376	129	2.5	129	90	1	514	24	19	30	25	1.98
38146--38386	43	5.7	41	75	14	190	23	19	32	24	1.98
38504--38684	100	1.8	100	84	2	247	38	12	14	34	1.84
38829--38997	65	2.6	65	79	7	164	42	10	14	32	1.80
38871--38996	65	2.0	65	85	1	173	42	11	12	33	1.78
39502--39611	36	3.1	36	82	1	123	36	11	20	31	1.88
39507--39639	36	3.7	36	79	6	92	33	13	19	33	1.91
39838--39899	21	3.1	21	62	17	51	35	12	20	30	1.91
39840--39940	38	2.7	38	83	4	107	33	13	17	34	1.90
40281--40343	16	3.9	17	78	19	73	25	0	23	50	1.49
40274--40329	4	14.5	4	88	7	89	26	0	23	50	1.50
47630--47696	3	22.0	3	84	14	84	67	1	0	31	1.00
47631--47715	12	7.2	11	75	9	53	69	1	0	29	0.96
47627--47714	18	5.1	18	82	15	98	68	1	0	30	0.97
54786--55056	146	1.8	146	88	3	364	33	18	11	36	1.86
58034--58063	14	2.1	14	93	0	51	83	6	6	3	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61837--62339	215	2.3	214	90	4	780	51	7	10	30	1.63
62437--62570	2	68.0	2	74	16	111	47	3	0	47	1.25
62437--62596	9	17.2	9	71	23	84	48	5	1	45	1.32
62691--62744	17	3.1	17	81	2	63	46	0	3	50	1.19
62723--62781	22	2.5	24	81	13	77	44	1	5	49	1.34
64963--64989	2	13.5	2	100	0	54	51	0	0	48	1.00
68204--68283	35	2.4	34	87	4	108	45	17	0	37	1.49
68266--68343	35	2.2	34	84	6	102	41	0	15	43	1.46

Tables:   1

The End!