genome.fa.s6604.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006604.1 Hibiscus syriacus cultivar Beakdansim tig00016202_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110150

Tables:   1   

This is table  1  of  1  ( 116 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9204--9283	27	2.9	27	77	15	83	46	6	2	45	1.42
9204--9281	13	5.5	15	69	23	53	46	6	2	44	1.42
10381--10426	19	2.5	18	82	6	65	17	13	0	69	1.19
10534--10604	5	14.4	5	76	14	58	19	7	0	73	1.06
21114--21177	10	5.9	11	80	12	62	79	0	12	7	0.92
21120--21177	11	5.2	11	79	8	55	82	0	12	5	0.82
21134--21177	6	7.7	6	84	5	56	81	0	13	4	0.83
21772--21812	21	2.0	21	85	0	55	53	17	7	21	1.67
32729--32767	18	2.2	18	95	0	69	20	48	20	10	1.78
32716--32776	31	2.0	30	93	3	104	18	45	21	14	1.84
32751--32804	8	7.5	8	73	23	57	14	35	25	24	1.94
32703--32751	13	3.8	13	91	0	80	18	46	18	16	1.84
32764--32805	7	5.7	7	83	10	57	14	30	28	26	1.95
32764--32804	15	2.7	15	92	0	73	14	31	26	26	1.95
35333--35397	12	5.4	12	78	7	69	13	15	16	53	1.73
35329--35399	24	3.0	24	82	0	97	16	14	16	52	1.76
37542--37580	18	2.2	18	95	0	69	20	48	20	10	1.78
37529--37589	31	2.0	30	93	3	104	18	45	21	14	1.84
37564--37617	8	7.5	8	73	23	57	14	35	25	24	1.94
37516--37564	13	3.8	13	91	0	80	18	46	18	16	1.84
37577--37617	7	5.6	7	83	11	55	14	31	26	26	1.95
37577--37617	15	2.7	15	92	0	73	14	31	26	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40121--40190	12	5.8	12	80	6	79	14	15	18	51	1.77
40084--40192	24	4.5	24	77	2	112	19	15	17	47	1.82
42333--42371	18	2.2	18	95	0	69	20	48	20	10	1.78
42320--42380	31	2.0	30	93	3	104	18	45	21	14	1.84
42355--42408	8	7.5	8	73	23	57	14	35	25	24	1.94
42307--42355	13	3.8	13	91	0	80	18	46	18	16	1.84
42368--42409	7	5.7	7	83	10	57	14	30	28	26	1.95
42368--42408	15	2.7	15	92	0	73	14	31	26	26	1.95
44932--45001	12	5.8	12	80	6	79	14	15	18	51	1.77
44895--45003	24	4.5	24	77	2	112	19	15	17	47	1.82
47146--47184	18	2.2	18	95	0	69	20	48	20	10	1.78
47133--47193	31	2.0	30	93	3	104	18	45	21	14	1.84
47168--47221	8	7.5	8	73	23	57	14	35	25	24	1.94
47120--47168	13	3.8	13	91	0	80	18	46	18	16	1.84
47181--47222	7	5.7	7	83	10	57	14	30	28	26	1.95
47181--47221	15	2.7	15	92	0	73	14	31	26	26	1.95
49744--49813	12	5.8	12	80	6	79	14	15	18	51	1.77
49707--49815	24	4.5	24	77	2	112	19	15	17	47	1.82
50952--51001	2	25.0	2	100	0	100	50	0	0	50	1.00
51459--51603	65	2.2	65	84	7	179	32	23	17	26	1.96
51543--51649	45	2.4	45	85	4	135	29	21	19	28	1.98
51619--51667	19	2.6	19	87	9	66	24	26	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52629--52687	27	2.1	27	81	3	64	20	6	1	71	1.18
56132--56172	11	3.8	11	81	15	50	12	4	2	80	0.97
56114--56173	20	3.0	20	81	11	70	10	6	5	78	1.08
57061--57125	32	2.0	32	87	0	94	33	6	23	36	1.80
57340--57380	21	2.0	21	90	0	64	41	0	19	39	1.52
58521--58597	25	3.0	24	74	20	66	45	2	2	49	1.29
60047--60114	24	2.8	24	77	20	70	48	1	1	48	1.19
60050--60122	24	3.0	24	73	16	62	45	2	2	49	1.31
60861--60946	14	6.2	14	67	11	52	47	1	2	48	1.22
61582--61623	20	2.0	22	86	13	61	50	0	2	47	1.14
62354--62395	20	2.0	22	86	13	61	50	0	2	47	1.14
62397--62476	25	3.0	25	74	16	65	45	2	1	51	1.22
62404--62492	24	3.9	24	70	12	71	47	1	1	50	1.15
62429--62511	16	5.4	16	70	12	66	44	0	1	54	1.08
62476--62535	26	2.3	26	80	5	68	46	1	0	51	1.10
63189--63256	30	2.3	30	82	10	77	44	1	2	51	1.25
63200--63256	30	1.9	30	85	7	80	45	1	3	49	1.29
63852--63919	24	2.9	25	77	18	74	54	2	1	41	1.24
64717--64777	29	2.1	29	81	6	70	47	0	1	50	1.10
64697--64817	32	3.8	32	77	10	106	46	1	0	51	1.16
65448--65492	15	3.1	15	83	6	56	44	2	0	53	1.13
66220--66264	15	3.1	15	83	6	56	44	2	0	53	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66943--67001	21	2.9	21	82	2	66	50	1	1	45	1.21
67011--67087	25	3.0	25	75	17	61	44	2	2	50	1.29
67090--67154	31	2.3	30	82	12	75	47	0	0	52	1.00
57302--83761	778	34.1	780	95	2	46870	43	8	8	38	1.67
68550--68607	14	4.1	14	79	0	53	37	3	0	58	1.15
70097--70141	15	3.1	15	83	6	56	44	2	0	53	1.13
70841--70882	20	2.0	22	86	13	61	50	0	2	47	1.14
71648--71692	15	3.1	15	83	6	56	44	2	0	53	1.13
72514--72548	16	2.2	16	89	0	52	45	0	0	54	0.99
72514--72572	26	2.3	26	79	5	66	50	1	0	47	1.11
73289--73348	26	2.4	25	80	5	68	46	1	0	51	1.10
73419--73452	18	1.9	17	88	5	50	47	2	11	38	1.55
74690--74783	24	4.0	23	74	20	72	50	2	1	46	1.20
75544--75595	22	2.4	23	78	12	56	50	1	1	46	1.23
76303--76347	15	3.1	15	83	6	56	44	2	0	53	1.13
77022--77084	21	3.0	20	81	11	56	55	1	1	41	1.19
77896--77958	27	2.4	27	79	10	76	47	1	1	49	1.20
77927--77982	15	3.5	16	70	18	53	41	0	1	57	1.09
78608--78649	20	2.0	22	86	13	61	50	0	2	47	1.14
78651--78730	25	3.0	25	75	22	67	46	2	1	50	1.23
78659--78740	24	3.1	24	73	23	67	47	1	1	50	1.16
78658--78743	23	3.8	23	66	17	63	48	1	1	48	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78683--78765	16	5.4	16	68	12	57	45	0	1	53	1.08
78708--78791	42	2.0	43	83	6	109	46	1	0	52	1.08
78658--78792	68	2.0	68	80	11	152	48	1	0	49	1.15
81053--81087	16	2.2	16	89	0	52	45	0	0	54	0.99
81053--81111	26	2.3	26	79	5	66	50	1	0	47	1.11
84044--84380	87	3.9	87	89	2	507	33	13	9	43	1.77
84128--84172	23	2.0	23	86	0	63	40	15	8	35	1.79
84215--84259	23	2.0	23	86	0	63	35	17	8	37	1.81
84302--84346	23	2.0	23	95	0	81	42	17	8	31	1.80
84734--84806	20	3.7	20	73	14	71	30	30	13	26	1.94
84814--84919	21	5.1	21	91	1	151	23	21	16	38	1.92
84912--84996	20	4.3	20	80	3	100	42	22	12	22	1.87
85124--85171	22	2.2	22	88	0	69	27	43	8	20	1.80
85379--85410	13	2.5	13	100	0	64	0	6	15	78	0.95
85443--85521	20	4.0	20	91	1	115	53	20	15	11	1.72
87896--87935	14	2.9	14	80	0	53	30	0	17	52	1.45
87845--87984	68	2.2	66	81	11	157	32	1	15	50	1.53
88046--88103	20	2.9	20	92	0	98	41	22	18	17	1.90
88528--88563	18	2.0	18	88	0	54	19	2	25	52	1.59
90833--90886	24	2.2	24	93	0	90	40	16	18	24	1.90
93151--93215	33	2.0	33	84	0	85	44	21	0	33	1.53
93404--93684	147	1.9	148	90	3	451	36	6	9	47	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93992--94146	64	2.4	64	78	10	149	34	23	13	28	1.93
94370--94410	9	4.3	9	85	11	55	56	12	21	9	1.65
94386--94423	11	3.5	11	96	3	69	57	7	26	7	1.54
94370--94423	22	2.7	21	83	13	69	57	11	22	9	1.61
105443--105484	17	2.5	16	85	11	57	40	0	16	42	1.48
105446--105484	16	2.3	18	91	8	64	35	0	17	46	1.49

Tables:   1

The End!